PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023547799.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C2H2

Protein Properties

Length: 478aa MW: 52107.3 Da PI: 9.5956

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023547799.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.3	1.3e-05	60	82	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_023547799.1 60 FVCEICNKGFQRDQNLQLHRRGH 82 89*******************88 PP

Sequence ? help Back to Top
Protein Sequence Length: 478 aa Download sequence
MFSPTIMANS TPLSDQATIF SNIHHSPQKL KKKRSLPGNP DPDAEVIALS PTTLVATNRF 60 VCEICNKGFQ RDQNLQLHRR GHKLPWKLKQ RSSKEVKKKA YVCPEEGCVH HNPSRALGDL 120 TGIKKHYSRK HGEKKWKCLK CSKLYAVQSD WKAHSKTCGT REYRCDCGTL FSRKDRFVTH 180 RAFCDALAEE SARLSANQLA IASATSGATG VDVNLSSTMV AQSLFPFGNH YQFSNSLIPS 240 SPSSLSLSSS QTLVSLNPWN HPLNPNPNHT LQMIKPEDSN SHHFHQIPNL PLSDDSSNNN 300 NYHPFGLIQD HHHKASSSSS SSSSSMITSP FRNLHVSVQP ASNAATSAQL SATALLQKAA 360 TVGIGAAKSG HHQPESVGHI THFNIPEFRP SNHISSLSQL GPDYATWQKS DRLTRDFLGL 420 TGHGSGSGSG GAVHVSMIVK DMLTYAGGTE MFKPHNNNNN SNGFGYGEAA ANGTWGDC

Sequence ? help Back to Top

Protein Sequence Length: 478 aa Download sequence

MFSPTIMANS TPLSDQATIF SNIHHSPQKL KKKRSLPGNP DPDAEVIALS PTTLVATNRF  60
VCEICNKGFQ RDQNLQLHRR GHKLPWKLKQ RSSKEVKKKA YVCPEEGCVH HNPSRALGDL  120
TGIKKHYSRK HGEKKWKCLK CSKLYAVQSD WKAHSKTCGT REYRCDCGTL FSRKDRFVTH  180
RAFCDALAEE SARLSANQLA IASATSGATG VDVNLSSTMV AQSLFPFGNH YQFSNSLIPS  240
SPSSLSLSSS QTLVSLNPWN HPLNPNPNHT LQMIKPEDSN SHHFHQIPNL PLSDDSSNNN  300
NYHPFGLIQD HHHKASSSSS SSSSSMITSP FRNLHVSVQP ASNAATSAQL SATALLQKAA  360
TVGIGAAKSG HHQPESVGHI THFNIPEFRP SNHISSLSQL GPDYATWQKS DRLTRDFLGL  420
TGHGSGSGSG GAVHVSMIVK DMLTYAGGTE MFKPHNNNNN SNGFGYGEAA ANGTWGDC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	1e-106	C2H2 family protein