PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023547039.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

HD-ZIP

Protein Properties

Length: 275aa MW: 30653.8 Da PI: 8.7655

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023547039.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.1	3.1e-18	127	181	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q Lee F++n++++ ++++ LA++l+L rqV vWFqNrRa+ k XP_023547039.1 127 RKKLRLSKQQSALLEESFKQNSTLNPKQKQTLARHLNLRPRQVEVWFQNRRARTK 181 778899***********************************************98 PP
2	HD-ZIP_I/II	121.9	3.2e-39	127	216	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlsk+q++lLEesF+++++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +eL+ +l XP_023547039.1 127 RKKLRLSKQQSALLEESFKQNSTLNPKQKQTLARHLNLRPRQVEVWFQNRRARTKMKQTEVDCEFLKKCCETLTNENRRLQKELQELK-AL 216 69*************************************************************************************9.55 PP

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence
MGLDDVSQTS LVLGLGISEA ASPILNNFKN NKKKKNNKEN PTSLEFEPCA LTLGFSGDVD 60 PPPHHHPHHH HHLYRQASPH SSAVCSSFSG GGGGGIKRER DLSSEEVELE RVCCRVSDED 120 EDGCNTRKKL RLSKQQSALL EESFKQNSTL NPKQKQTLAR HLNLRPRQVE VWFQNRRART 180 KMKQTEVDCE FLKKCCETLT NENRRLQKEL QELKALKLAH PLYMHMPAAT LTMCPSCERV 240 GGVGVGVGDG ASKPKFSMAP KPHFYNPFSN PSAAC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	126	132	TRKKLRL
2	176	184	RRARTKMKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	5e-72	HD-ZIP family protein