PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023546990.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family GATA
Protein Properties Length: 343aa    MW: 38379.9 Da    PI: 6.8722
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023546990.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.15e-18230264135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  XP_023546990.1 230 CMHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 264
                     99*****************************9885 PP
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    
MEPPEFFHLK AYSSDHHHHH HHTAAAEHDL FFVENLLDFS NHADADDHHA DAGLLSDNSN  60
NNHHNTNTPS CFHDNGNSAQ LTSFLDHVNL PDAHFSAELA IPYDELLELE WLSNFVEECE  120
YIQNLELITG VKVKPHEPTA VSTRNAAAIF NPDVVSVPAK ARSKRSRAVV SNWNNSLLLP  180
LSPTTSSSES EINADPPQLV KKAPPKAVVT AKKKDSSEGG VSPAGEERRC MHCATDKTPQ  240
WRTGPMGPKT LCNACGVRYK SGRLVPEYRP AASPTFVLTK HSNSHRKVME LRRQKEIIRG  300
QQPQPLVLDH HRDLIFDASS CDNYLIYQHV GPDLRQLRCS RFP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.13e-72GATA family protein