PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023546679.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family SRS
Protein Properties Length: 338aa    MW: 36329.2 Da    PI: 6.7625
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023546679.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702227.23.1e-701042603153
          DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..aeaaskrkrel......kskkqsalsst 89 
                      g+++CqdCGnqakkdCa+ RCRtCCksrgf+C+thvkstWvpaakrrerqqq aa+++++++++    ++skr+re+      +++++sa+++ 
  XP_023546679.1 104 GGGMNCQDCGNQAKKDCAYLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQIAALQQQQQQEQfrGGENSKRQRETqittavSAATASATACP 198
                     5789*****************************************************99999988665566666666543433333344444444 PP

          DUF702  90 klssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                     +l+s +  + le +++P+ev+s+avfrcv+vs++dd++ee+aYqtav+igGhvfkGiLydqG+e
  XP_023546679.1 199 RLPSIT--SGLELAQFPSEVNSPAVFRCVKVSAMDDADEEFAYQTAVNIGGHVFKGILYDQGPE 260
                     444444..3467777***********************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    
MAGFFYLGGG REGPPNKQEE EEEREQNLFM YRNEEIYNKG FEIWPQQYTN HHQNPSLTDH  60
LSFGVGPSRR SFMINDSDEP SRSAFTVMRP AAAFAASAAA AAAGGGMNCQ DCGNQAKKDC  120
AYLRCRTCCK SRGFQCQTHV KSTWVPAAKR RERQQQIAAL QQQQQQEQFR GGENSKRQRE  180
TQITTAVSAA TASATACPRL PSITSGLELA QFPSEVNSPA VFRCVKVSAM DDADEEFAYQ  240
TAVNIGGHVF KGILYDQGPE VRYTAAGESS SGLGGDGSTH PLNLIAGSSN AGPTSASTSA  300
ATSTNPSAAA APLLDPTIYP APLNAFMAGT QFFPPSRS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75520.12e-72SRS family protein