PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023546637.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

SBP

Protein Properties

Length: 452aa MW: 50590.9 Da PI: 8.725

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023546637.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	126.8	8.5e-40	151	227	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 CqvegC+ d+s++k+y+r+h+vCe hsk+p+v++ g e+rfCqqCsrfh++sefD +krsCrrrL++hn+rrrk+q+ XP_023546637.1 151 CQVEGCNIDISNIKDYYRKHRVCESHSKSPKVIIGGFERRFCQQCSRFHSISEFDGKKRSCRRRLSNHNARRRKPQS 227 **************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence
MRRFPQPFVI DGVECKTPFT MGLGQLNSGD DRTTGGPFFK LGQTSPKISK SVSTNSSSFE 60 KSRTTKFTLE GFEPTLEDSC NKKEFVEAEV VSTYGTPETS TCSCEPMLSL KLGKQAYFEN 120 ASAVNLTKPS ALMVESRATR KRCQNTPSAH CQVEGCNIDI SNIKDYYRKH RVCESHSKSP 180 KVIIGGFERR FCQQCSRFHS ISEFDGKKRS CRRRLSNHNA RRRKPQSKVV SLNPARLSSW 240 DFENRQIDIF SDKLSLIYPT PNEKSAWESA FSSRHPQCGK YVSKPEPTYG SIGQLNVSGD 300 EMCYVHAMPY HDNTSKAVPF KGAATKILDP EGYVIPSNLN SAQDLQRALS LLSTDTKGPY 360 EARLFAPDNP NRLVNPNYAN QPSISQSPMN LGIQTLPFAS VDSQSWGNGH HHPIELQMQI 420 HHPNIEGGNN LFQDFQLFKT PCEIGMFSNQ IS

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence

MRRFPQPFVI DGVECKTPFT MGLGQLNSGD DRTTGGPFFK LGQTSPKISK SVSTNSSSFE  60
KSRTTKFTLE GFEPTLEDSC NKKEFVEAEV VSTYGTPETS TCSCEPMLSL KLGKQAYFEN  120
ASAVNLTKPS ALMVESRATR KRCQNTPSAH CQVEGCNIDI SNIKDYYRKH RVCESHSKSP  180
KVIIGGFERR FCQQCSRFHS ISEFDGKKRS CRRRLSNHNA RRRKPQSKVV SLNPARLSSW  240
DFENRQIDIF SDKLSLIYPT PNEKSAWESA FSSRHPQCGK YVSKPEPTYG SIGQLNVSGD  300
EMCYVHAMPY HDNTSKAVPF KGAATKILDP EGYVIPSNLN SAQDLQRALS LLSTDTKGPY  360
EARLFAPDNP NRLVNPNYAN QPSISQSPMN LGIQTLPFAS VDSQSWGNGH HHPIELQMQI  420
HHPNIEGGNN LFQDFQLFKT PCEIGMFSNQ IS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	207	224	KKRSCRRRLSNHNARRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.1	7e-44	SBP family protein