PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023545593.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

bHLH

Protein Properties

Length: 418aa MW: 44165.4 Da PI: 6.346

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023545593.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.8	1.5e-11	225	270	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq XP_023545593.1 225 HSIAERLRRERIAERMKGLQELVPNA-----NKTDKASMLDEIIDYVKFLQ 270 99*********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence
MRLTNSLPDL HSHRRNQPPE TDDSQLHHHL QTSVFHPPSF SSDDFLDQIL STAPSPWELP 60 IGLPNPHSNL PPQPPPPSNP DNVAFQIGDA TPAGKMAMAL LQQQLLMSRG IATVSDDSSL 120 LPMLSNDVVD VEGSSSFKCP NPINHGSIIP SIFNEFTGFL NASGSSQNQN QFQAGNSNSQ 180 KQNFIAPVSI NPPPPSVPGS GGGSATSAQP RQRVRARRGQ ATDPHSIAER LRRERIAERM 240 KGLQELVPNA NKTDKASMLD EIIDYVKFLQ LQVKVLSVSR LGGATAAMPS LLPDSSTQGG 300 TDCNLSNETG GAVGQTSTGG PTSNDTMAIT ENQVVKLMEE DMGSAMQYLQ GKGLCLMPIS 360 LATAISAATC HSRPITTSKG GGDAPTSPSL SALTSQSTVL GNGTVDRAVR DSASVSRP

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence

MRLTNSLPDL HSHRRNQPPE TDDSQLHHHL QTSVFHPPSF SSDDFLDQIL STAPSPWELP  60
IGLPNPHSNL PPQPPPPSNP DNVAFQIGDA TPAGKMAMAL LQQQLLMSRG IATVSDDSSL  120
LPMLSNDVVD VEGSSSFKCP NPINHGSIIP SIFNEFTGFL NASGSSQNQN QFQAGNSNSQ  180
KQNFIAPVSI NPPPPSVPGS GGGSATSAQP RQRVRARRGQ ATDPHSIAER LRRERIAERM  240
KGLQELVPNA NKTDKASMLD EIIDYVKFLQ LQVKVLSVSR LGGATAAMPS LLPDSSTQGG  300
TDCNLSNETG GAVGQTSTGG PTSNDTMAIT ENQVVKLMEE DMGSAMQYLQ GKGLCLMPIS  360
LATAISAATC HSRPITTSKG GGDAPTSPSL SALTSQSTVL GNGTVDRAVR DSASVSRP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	230	235	RLRRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	2e-69	bHLH family protein