PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023545030.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C2H2

Protein Properties

Length: 491aa MW: 51985.6 Da PI: 8.9169

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023545030.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	61	83	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_023545030.1 61 FVCEICNKGFQRDQNLQLHRRGH 83 89*******************88 PP
2	zf-C2H2	11.3	0.0011	137	159	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + XP_023545030.1 137 WKCDKCSKKYAVQSDWKAHSKIC 159 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 491 aa Download sequence
MPADLENSSS ASGEPTESSP GNVAATPKPA AKKKRNLPGM PDPDAEVIAL SPKTLLATNR 60 FVCEICNKGF QRDQNLQLHR RGHNLPWKLR QRTSKEVKKK VYVCPESSCV HHDPSRALGD 120 LTGIKKHFCR KHGEKKWKCD KCSKKYAVQS DWKAHSKICG TREYKCDCGT LFSRRDSFIT 180 HRAFCDALAE ENAKAQPQSL VDKPVSDSQK AVGSSPKPSP PPEPSPPPST CVLSPVLPIQ 240 SQENRPEEAP VATTGMSGSC SSSSSKSSSS NNSSSSQFAS LFASTTTSMS LQPPRPPTFT 300 DLIHTMACSD RLTDYAPTTT IEPISLCLST SHGASVFGAA SQELRQYTPS PQPAMSATAL 360 LQKAAQMGAA ASNASLLRGL GLGLVPSSTT SAAPQERLPW NQQRQIEADG ISISAGLGLG 420 LPCDGNSGLK ELMRSSNHSI FAPKHTTLDF LGLGMAAAGG SPNSSLAALI GGSMGSYGGG 480 DKSSKDMNTN N

Sequence ? help Back to Top

Protein Sequence Length: 491 aa Download sequence

MPADLENSSS ASGEPTESSP GNVAATPKPA AKKKRNLPGM PDPDAEVIAL SPKTLLATNR  60
FVCEICNKGF QRDQNLQLHR RGHNLPWKLR QRTSKEVKKK VYVCPESSCV HHDPSRALGD  120
LTGIKKHFCR KHGEKKWKCD KCSKKYAVQS DWKAHSKICG TREYKCDCGT LFSRRDSFIT  180
HRAFCDALAE ENAKAQPQSL VDKPVSDSQK AVGSSPKPSP PPEPSPPPST CVLSPVLPIQ  240
SQENRPEEAP VATTGMSGSC SSSSSKSSSS NNSSSSQFAS LFASTTTSMS LQPPRPPTFT  300
DLIHTMACSD RLTDYAPTTT IEPISLCLST SHGASVFGAA SQELRQYTPS PQPAMSATAL  360
LQKAAQMGAA ASNASLLRGL GLGLVPSSTT SAAPQERLPW NQQRQIEADG ISISAGLGLG  420
LPCDGNSGLK ELMRSSNHSI FAPKHTTLDF LGLGMAAAGG SPNSSLAALI GGSMGSYGGG  480
DKSSKDMNTN N

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	1e-106	C2H2 family protein