PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023544862.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 646aa MW: 73890.7 Da PI: 8.228

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023544862.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.5	2.6e-07	461	500	3	39
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkq 39 +W+++E ell ++ +++++g +W+ I++++g++R+ ++ XP_023544862.1 461 PWSKDEIELLRKGMQKYPKGtsrRWEVISEYIGTKRSVEE 500 8********************************8898876 PP
2	Myb_DNA-binding	26.3	1.7e-08	589	631	3	43
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 W++ + lv+a k ++++ +W+++a+ ++ g+t +qck + XP_023544862.1 589 DWSAVQERALVQALKTFPKEtsqRWERVAAAVP-GKTVNQCKKK 631 6******************************.******87 PP

Sequence ? help Back to Top
Protein Sequence Length: 646 aa Download sequence
MTVLANLRLL TYSEEIVDGQ PIYVSSNCLP IKAFKYEPAG HAFHNAALKL LGCEDEEVSD 60 DNEQTSDDAE QKYAPSFDSY SSKGKKKSGG STQQDHYALL GLSNLRYLAT EEQIRKSYRE 120 TALKYHPDKQ AALLLAEETE AAKQAKKDEI ETHFKLIQEA YEVLIDPVKR RIYDSTDEFD 180 DEVPTDCAPQ DFFKVFGPAF MRNGRWSVNQ SIPSLGDDKT PLKEVDDFYN FWYSFKSWRE 240 FPHTDEFDLE QAESRDHKRW MERQNAKLSE KARKEEYARI RTLVDNAYKR DPRIQRRKEE 300 EKAQKQRKKE AKFLAKKLQE EEAIRLAEEE KRRKEEEDRR AAEVAQQQKK VKEREKKLLR 360 KERTRLRSLS GPIVSQSLLD LSEEDVENLC SSLDIEQLRS ICDKMEGKTG MELAKVLKDA 420 QECSNSERKQ PEGKKTGHQN GFTSANAGTT LSSSLPKKER PWSKDEIELL RKGMQKYPKG 480 TSRRWEVISE YIGTKRSVEE ILKATKTILL QKPDSSKAFD SFLEKRKPAQ SIASPLSTRE 540 ELVGSSSQKP EDNPATNGNL DTSSSQSVNN QTPNDSSANG VSSSSDQDDW SAVQERALVQ 600 ALKTFPKETS QRWERVAAAV PGKTVNQCKK KITSMKESFR NKKNAA

Sequence ? help Back to Top

Protein Sequence Length: 646 aa Download sequence

MTVLANLRLL TYSEEIVDGQ PIYVSSNCLP IKAFKYEPAG HAFHNAALKL LGCEDEEVSD  60
DNEQTSDDAE QKYAPSFDSY SSKGKKKSGG STQQDHYALL GLSNLRYLAT EEQIRKSYRE  120
TALKYHPDKQ AALLLAEETE AAKQAKKDEI ETHFKLIQEA YEVLIDPVKR RIYDSTDEFD  180
DEVPTDCAPQ DFFKVFGPAF MRNGRWSVNQ SIPSLGDDKT PLKEVDDFYN FWYSFKSWRE  240
FPHTDEFDLE QAESRDHKRW MERQNAKLSE KARKEEYARI RTLVDNAYKR DPRIQRRKEE  300
EKAQKQRKKE AKFLAKKLQE EEAIRLAEEE KRRKEEEDRR AAEVAQQQKK VKEREKKLLR  360
KERTRLRSLS GPIVSQSLLD LSEEDVENLC SSLDIEQLRS ICDKMEGKTG MELAKVLKDA  420
QECSNSERKQ PEGKKTGHQN GFTSANAGTT LSSSLPKKER PWSKDEIELL RKGMQKYPKG  480
TSRRWEVISE YIGTKRSVEE ILKATKTILL QKPDSSKAFD SFLEKRKPAQ SIASPLSTRE  540
ELVGSSSQKP EDNPATNGNL DTSSSQSVNN QTPNDSSANG VSSSSDQDDW SAVQERALVQ  600
ALKTFPKETS QRWERVAAAV PGKTVNQCKK KITSMKESFR NKKNAA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11450.1	0.0	MYB family protein