PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023544803.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family GATA
Protein Properties Length: 220aa    MW: 24710.8 Da    PI: 7.9589
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023544803.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA64.51.2e-20120154135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C+nC tt+TplWR+gp+g+k+LCnaCG++y+k+++
  XP_023544803.1 120 CANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEER 154
                     ********************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    
MMQRCGSYQC YSAGECSCGA FYAQQGSYFS TPAYNNYYES EHYSFDSSSP VDCTLSLGTP  60
STRMTEYDEK RREEQHSASN FAWDLSRTKH GHSSKTSRRS GNTGGDKSRA NGDQMFSRHC  120
ANCDTTTTPL WRNGPSGPKS LCNACGIRYK KEERKAASSG QQANSMYKNE ASSWLQHHSH  180
SQKTPRFPHG ITNDLNPGVA FLSWSLNDTE QPQLYYDFTS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50870.12e-39GATA family protein