PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023544765.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 298aa MW: 33612.9 Da PI: 7.5654

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023544765.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.4	6.1e-17	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+ +++q+G+g +W + +r++g++R++k+c++rw++yl XP_023544765.1 14 KGPWSPEEDARLKAYIEQFGTGgNWIALPRKIGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	38.2	3.2e-12	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd ++ + G++ W+ Ia+ ++ gRt++++k++w++ XP_023544765.1 69 GGFSEEEDNIICSLYITIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 569****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence
MGRAPCCDKA NVKKGPWSPE EDARLKAYIE QFGTGGNWIA LPRKIGLKRC GKSCRLRWLN 60 YLRPNIKHGG FSEEEDNIIC SLYITIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGK 120 QQREQQAMAR RIHTLKQDFD KNMNNVIIHP AAVSMNMNHD YEAPYYPNPN TSGQDVRELI 180 IKMGGRRLVC CDHPFELNPV DEAHQHPSLV FESSNFGQFS GDVQYGMSNK VEDPTAGMFH 240 GTEFGDSLHN LESGLEGSYG MGSSSSVYPP LVSSDFEASH QSFAHNHVFP ESTPYCLQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49690.1	2e-77	MYB family protein