PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023544658.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C2H2

Protein Properties

Length: 272aa MW: 29982.3 Da PI: 8.3813

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023544658.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.8	0.00036	206	228	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp C+ Fs s+L+ H ++ H XP_023544658.1 206 QCPQCSAKFSLVSSLVEHVKKvH 228 7*******************999 PP
2	zf-C2H2	14.9	7.8e-05	245	266	3	23
ETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23 Cp+C++ F ++ L+ Hi + H XP_023544658.1 245 CPKCSRGFIDPVALVEHIEKdH 266 ******************9988 PP

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence
MGTPEFPNLG QHCNLEDCKQ IDFLPFTCDC CRQVFCLEHR SYNRHSCPKA DRRDVTVVIC 60 PLCAKGVRLV PDQDPNITWE IHVNTECDPS NYEKVTKKKK CPVPGCRESL TFSNTIKCRD 120 CSVDHCLKHR FGLDHKCPGP KKPEPAGFPF VGVLSRSKQE ENGPKKALPN TASSNWTTAL 180 LNVASSFKAS WKATGNNSNG NGHVEQCPQC SAKFSLVSSL VEHVKKVHES GVNRPGAKKV 240 VIDACPKCSR GFIDPVALVE HIEKDHGGTS KA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41835.1	1e-120	C2H2 family protein