PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023544461.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family GATA
Protein Properties Length: 293aa    MW: 32734.2 Da    PI: 6.7364
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023544461.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.83.4e-19215248134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     Cs+Cg+ kTp+WR gp g+ktLCnaCG+++++ +
  XP_023544461.1 215 CSHCGVQKTPQWRAGPLGSKTLCNACGVRFKSGR 248
                     *******************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    
MEAALKMGLI NKPSPKLHLD ELRSANPQSS ASPSSDYIFV DQLFNFSNEE EEEEEEAEGE  60
EKNNHSSVSA PLQLQQYRES DEISNHSSTN SSGDVFWSVS SRDFEDLEWL SHLVADSTQE  120
EYSAAPLNCS VFLTEKPNSY QKEPTHHAPT LPNFESNLNT PFPSKPRSKR AKISGRVWSL  180
TNSISSPSLY PPQPKKPKKN PAEEGSGRVQ APRRCSHCGV QKTPQWRAGP LGSKTLCNAC  240
GVRFKSGRLF PEYRPACSPT FSSELHSNHH RKVLEMRQKK ETETAHSGPD PTP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36240.11e-48GATA family protein