PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023544460.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family GATA
Protein Properties Length: 303aa    MW: 33927.3 Da    PI: 5.6073
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023544460.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.83.5e-19225258134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     Cs+Cg+ kTp+WR gp g+ktLCnaCG+++++ +
  XP_023544460.1 225 CSHCGVQKTPQWRAGPLGSKTLCNACGVRFKSGR 258
                     *******************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    
MEAALKMGLI NKPSPKLHLD ELRSANPQSS ASPSSDYIFV DQLFNFSNEE DGFVEEEEEE  60
EEEEEEAEGE EKNNHSSVSA PLQLQQYRES DEISNHSSTN SSGDVFWSVS SRDFEDLEWL  120
SHLVADSTQE EYSAAPLNCS VFLTEKPNSY QKEPTHHAPT LPNFESNLNT PFPSKPRSKR  180
AKISGRVWSL TNSISSPSLY PPQPKKPKKN PAEEGSGRVQ APRRCSHCGV QKTPQWRAGP  240
LGSKTLCNAC GVRFKSGRLF PEYRPACSPT FSSELHSNHH RKVLEMRQKK ETETAHSGPD  300
PTP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36240.12e-48GATA family protein