PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023544346.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family GRAS
Protein Properties Length: 613aa    MW: 67259.7 Da    PI: 4.5529
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023544346.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS363.14e-1112426132374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      ++L+ecA+   +++  +a ++L +l+e +s++gdp++R+a+yf+eAL +rl+  ++++        + e++s++ + ++k++++++P+ kf+hl
  XP_023544346.1 242 LKTLIECARLT-ESEPDRAAQMLIQLKESSSEHGDPTERVAFYFLEALCRRLSLRSENCL------VSCESTSDDFTLSYKALNDACPYSKFAHL 329
                     689******65.558889999********************************9444433......333334899******************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     taNqaIle +e+++r+HiiDf+isqG+QW+aLlqaLa+R+ g+p  +Ri g+ +p  g   +++l +tg+rLa+fA+ l+++fef++ + + +e+
  XP_023544346.1 330 TANQAILEITENASRIHIIDFGISQGVQWAALLQALATRSTGKPtGIRISGIPAPMLGncPATALFATGNRLAEFAKLLELNFEFDP-ILTPIEE 423
                     ****************************************776659********9999999**************************.799**** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     l+ +++r++++E+laVn++lql++llde+        +vLkl ksl+Pk+v++ e ea++n+  F++rf +al+yysa+f+sl+ klpr+s+er 
  XP_023544346.1 424 LNESSFRIESEESLAVNFMLQLYNLLDETPRAVL---NVLKLAKSLNPKIVTLGEYEASLNRVGFFTRFNNALRYYSAIFESLDPKLPRDSNERL 515
                     **************************99998888...9********************************************************* PP

            GRAS 284 kvErellgreivnvvacegae.....rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvS 371
                      +E+ +lgr+i  vv  e ++     ++er+e++e+W++ +e++GF++v+ls++a +qak ll k++ s +y + e+s+ ++ l Wkd p+++vS
  XP_023544346.1 516 QLEKLVLGRRIGGVVGPESSAtaaggKTERMEEKEEWKMLMENSGFEAVNLSHYARSQAKILLWKYDySSEYCLMESSAGFLsLAWKDVPIITVS 610
                     ***************9887654445589***************************************9999*99999887777************ PP

            GRAS 372 aWr 374
                     +Wr
  XP_023544346.1 611 SWR 613
                     **8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 613 aa     Download sequence    
MANMCADSGN LMAIAQQVMK QKQLQEQQQQ QHPQQSPQQL TGPCTFGLNP WTASNHSLSG  60
APDLGFGLSG AGFPDPFQVQ RVVDGGDTSF QFPNLEHHSS AFRFTDFDGG AAAEFDSDEW  120
MDSLIVGGDS TESSNLPSGC EAWQSNSDFA FYGADPFIPC PSRLTIPCSS PSDLNRVIFP  180
DPPKSQTAIQ PPVVSWTGLT SATPPAVVKD TQVPNPPLIV HKSEDNGGSS SSAETESTPP  240
LLKTLIECAR LTESEPDRAA QMLIQLKESS SEHGDPTERV AFYFLEALCR RLSLRSENCL  300
VSCESTSDDF TLSYKALNDA CPYSKFAHLT ANQAILEITE NASRIHIIDF GISQGVQWAA  360
LLQALATRST GKPTGIRISG IPAPMLGNCP ATALFATGNR LAEFAKLLEL NFEFDPILTP  420
IEELNESSFR IESEESLAVN FMLQLYNLLD ETPRAVLNVL KLAKSLNPKI VTLGEYEASL  480
NRVGFFTRFN NALRYYSAIF ESLDPKLPRD SNERLQLEKL VLGRRIGGVV GPESSATAAG  540
GKTERMEEKE EWKMLMENSG FEAVNLSHYA RSQAKILLWK YDYSSEYCLM ESSAGFLSLA  600
WKDVPIITVS SWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein