PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023544089.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

ARF

Protein Properties

Length: 732aa MW: 80416.5 Da PI: 7.121

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023544089.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	75.5	6.2e-24	151	252	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d+ g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F + ++ XP_023544089.1 151 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyN-QQRPSQELVAKDLLGLKWKFRHIYRGQPRRHLLTTGWSAFVNKKRLVSGDAVLFL--RGND 242 99**************************963.3445679********************************************..4489 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +el+++++r+ XP_023544089.1 243 GELRLGIRRA 252 999**996 PP
2	Auxin_resp	105.9	4.6e-35	277	358	1	82
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +++a+s+ks F+v+YnPra++s+Fv +++k++k++++++svGmRf+++feted++ r +G ++g+ d+dp+ Wp+S+WrsL XP_023544089.1 277 VVNAISSKSSFSVCYNPRATSSQFVLPFHKFLKSMNRSFSVGMRFRLSFETEDAADLRHTGHITGIGDVDPIGWPGSRWRSL 358 689******************************************************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 732 aa Download sequence
MGALIDLNTT EEDESPSSAA SSVSSSSASA LTSSPSPSLT SSICLELWHA CAGPLTSLPK 60 KGNLVVYLPQ GHLEQMQEFP ATPSDLPPHI LCRVIDVQLH QAEAGSDEVY AQVSLLPENE 120 QMEHKMQEEM SNDIEEEDVE EGEKTTTPHM FCKTLTASDT STHGGFSVPR RAAEDCFPPL 180 DYNQQRPSQE LVAKDLLGLK WKFRHIYRGQ PRRHLLTTGW SAFVNKKRLV SGDAVLFLRG 240 NDGELRLGIR RAAQLKSGST FSNICSQKLN SSSIMDVVNA ISSKSSFSVC YNPRATSSQF 300 VLPFHKFLKS MNRSFSVGMR FRLSFETEDA ADLRHTGHIT GIGDVDPIGW PGSRWRSLMV 360 RWDDGEINRH GRVSPWEIEP SGSVSMSSNL VPPGLKRSRI GLSSTKLEFP VPHGIGATDF 420 GESLRFHKVL QGQEILGYNT PTDCDDNTRY HPPEKRRLLP DLHGSGIALM RNGPRNRLIN 480 SETSSRGFVF DESFQFQKVL QGQEIFPGPF YGRAMATNEV KESGGCGPVD GFRLSTTRDG 540 WPTTMQCENF HTRSSIPSAQ VSSPSSVFMF QQSMVPVLSF DSHNRGIMNK STSHNSGTAF 600 MTDNSMCPTS LGELNLLGLS HPSTTTASAF SGSKDLSSTT KAGCRLFGFS LTEEKNVGNT 660 DKGSPATTPI HAGTTIGAQC PLKSPLMSKV VGSNCTKQER WDKKECHGLI NLICIVMQGA 720 LQYHYANYST YY

Sequence ? help Back to Top

Protein Sequence Length: 732 aa Download sequence

MGALIDLNTT EEDESPSSAA SSVSSSSASA LTSSPSPSLT SSICLELWHA CAGPLTSLPK  60
KGNLVVYLPQ GHLEQMQEFP ATPSDLPPHI LCRVIDVQLH QAEAGSDEVY AQVSLLPENE  120
QMEHKMQEEM SNDIEEEDVE EGEKTTTPHM FCKTLTASDT STHGGFSVPR RAAEDCFPPL  180
DYNQQRPSQE LVAKDLLGLK WKFRHIYRGQ PRRHLLTTGW SAFVNKKRLV SGDAVLFLRG  240
NDGELRLGIR RAAQLKSGST FSNICSQKLN SSSIMDVVNA ISSKSSFSVC YNPRATSSQF  300
VLPFHKFLKS MNRSFSVGMR FRLSFETEDA ADLRHTGHIT GIGDVDPIGW PGSRWRSLMV  360
RWDDGEINRH GRVSPWEIEP SGSVSMSSNL VPPGLKRSRI GLSSTKLEFP VPHGIGATDF  420
GESLRFHKVL QGQEILGYNT PTDCDDNTRY HPPEKRRLLP DLHGSGIALM RNGPRNRLIN  480
SETSSRGFVF DESFQFQKVL QGQEIFPGPF YGRAMATNEV KESGGCGPVD GFRLSTTRDG  540
WPTTMQCENF HTRSSIPSAQ VSSPSSVFMF QQSMVPVLSF DSHNRGIMNK STSHNSGTAF  600
MTDNSMCPTS LGELNLLGLS HPSTTTASAF SGSKDLSSTT KAGCRLFGFS LTEEKNVGNT  660
DKGSPATTPI HAGTTIGAQC PLKSPLMSKV VGSNCTKQER WDKKECHGLI NLICIVMQGA  720
LQYHYANYST YY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33860.1	0.0	ARF family protein