PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023543822.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family GRAS
Protein Properties Length: 587aa    MW: 65022.5 Da    PI: 4.9224
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023543822.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS455.43.5e-1392185771374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     lv++L++cAeav++++l+la+al++r+  la +++ +m+++a++f+eALa+r++r        +p ++  ++++s+ l+    f+e +P+lkf+h
  XP_023543822.1 218 LVHALMACAEAVQQNNLNLAEALVKRIGYLAVSQAGAMRKVATFFAEALARRIYR-------VCPENPL-DHSMSDMLQ--LHFYESCPYLKFAH 302
                     689****************************************************.......2233333.233444433..35************ PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +taNqaIlea+eg++rvH+iDf+++qG+QWpaLlqaLa Rp+gpp +R+Tg+g+p++++++ l+e+g++Lak+Ae+++v+fe++ +va++l+dl+
  XP_023543822.1 303 FTANQAILEAFEGKKRVHVIDFSMNQGMQWPALLQALALRPSGPPAFRLTGIGPPAPDNSDYLQEVGWKLAKLAETINVEFEYRGFVANSLADLD 397
                     *********************************************************************************************** PP

            GRAS 191 leeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                      ++L+++p   E+++Vn+v++lh+ll++++++e+    v+++vk+++P++++vveqea+hn++ F++rf+e+l+yys+lfdsle++    +++++
  XP_023543822.1 398 ASMLELRPseVESVVVNSVFELHKLLARPGAIEK----VMSVVKQMKPEIMTVVEQEANHNGPVFMDRFTESLHYYSTLFDSLESS---PNNQDK 485
                     ********88899*********************....**********************************************99...689999 PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     ++++++lg++i+nvvaceg++r+erhetl +Wr r+ ++GF+p++l+++a kqa++ll+ ++ ++gyrvee++gsl+lgW++rpL+++SaW+
  XP_023543822.1 486 MMSEMYLGKQICNVVACEGSDRVERHETLTQWRTRFCSSGFEPIHLGSNAFKQASMLLALFGsGEGYRVEENNGSLTLGWHTRPLIATSAWK 577
                     99*****************************************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 587 aa     Download sequence    
MKREHHHLHP GPEPPSMAAA PNGDTYLNTG KAKLWEEDAQ LDGGMDELLA VLGYKVKSSD  60
MAEVAQKLEQ LEEAMCQVQD TGLSHLAFDT VHYNPSDLST WLESMITELH PPPSFPQPPP  120
SQMNDSSFLA PAESSTITSI DYDPQRQTSS LIFEESSSSD YDLKAITSSA IYSPRENKRL  180
KPSSESDPDL FSTSAIGASD SATRPIVLVD SQENGIQLVH ALMACAEAVQ QNNLNLAEAL  240
VKRIGYLAVS QAGAMRKVAT FFAEALARRI YRVCPENPLD HSMSDMLQLH FYESCPYLKF  300
AHFTANQAIL EAFEGKKRVH VIDFSMNQGM QWPALLQALA LRPSGPPAFR LTGIGPPAPD  360
NSDYLQEVGW KLAKLAETIN VEFEYRGFVA NSLADLDASM LELRPSEVES VVVNSVFELH  420
KLLARPGAIE KVMSVVKQMK PEIMTVVEQE ANHNGPVFMD RFTESLHYYS TLFDSLESSP  480
NNQDKMMSEM YLGKQICNVV ACEGSDRVER HETLTQWRTR FCSSGFEPIH LGSNAFKQAS  540
MLLALFGSGE GYRVEENNGS LTLGWHTRPL IATSAWKLGN NSVVVTH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein