PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023543514.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C3H

Protein Properties

Length: 868aa MW: 96518.4 Da PI: 7.9491

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023543514.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.5	4.2e-07	308	329	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++fa+ G C+ G +Ck++H XP_023543514.1 308 VICKYFAA-GSCRNGKNCKYSHH 329 589999.***********5 PP

Sequence ? help Back to Top
Protein Sequence Length: 868 aa Download sequence
MFILPVFRRK SLRVMSGSGR KHSSKWDLRE DSHFEADSVQ DHSWPGKESR PGWISAEIAS 60 DDGSKWSGMA TTNTVSKPMQ DWGLLSEEEP LPGTRASLKE DRPNKGYNKN MDGTAECDAD 120 KSYDTRMSPD LDGRRSHGSD LSDRNDWIRS VRGRSRSRSW SRSPPHGNKR DSGFHDRNRN 180 RTRVSTQLCR DFTSGRCRRG NGCQFLHQDD QNLDDSLENR NRKGGRSFRS NSHDFKDHPR 240 SGRSAAHCTD FVKGRCHRGA SCTFSHDSAF HELSRDSPND IARDRKNDRS KEVYFSRGER 300 EPCSSSLVIC KYFAAGSCRN GKNCKYSHHS QPRASPERKS STDKWEHVQC SDGREQSWDG 360 LKSSELASGS DFTQLIEDKK EETASEEPRY TWPSDKKCDH GLNNESKTRW DRAVDIKTVR 420 SNKNDAIPSK VENAGGCTGS SDPRGHRKWP SDDMEMSPDW HYPVQPSNHV VKGDCNVMQD 480 SGSQTSTALA ISHAIVQEAL AKNQDIAIEP IVVDITHFRK NHTLTKDDTI ASASNDNITI 540 DRTVASHAEG NPSGNVVLGQ RMAYHSDHPD GTVTNPKISD GNFRVKLQKE DESMPGINSG 600 TTVTPNIVTN DQIRQITDLS ASLAQYFGNA QPLPQLYASL NAQSVSEAPS FPYSDASVGA 660 LGASMKTAPV IESSKQHDSA LCNSLQLKKL EVTKTPQKST TEVKGEVQIP NLPLSSGPCG 720 ISAEETLHGK PTADGDAIKE KNGDGDNENK TDPATNEDSQ KIDTTENANG NDEIHDKKKS 780 KDTKGIRAFK FALVEFVKEL LKPTWKEGHI SKDVYKTIVK KVVDKVTGSL QDGHIPQTQE 840 KIDHYLSFSK SKLTKLVQAY VDRVQKTT

Sequence ? help Back to Top

Protein Sequence Length: 868 aa Download sequence

MFILPVFRRK SLRVMSGSGR KHSSKWDLRE DSHFEADSVQ DHSWPGKESR PGWISAEIAS  60
DDGSKWSGMA TTNTVSKPMQ DWGLLSEEEP LPGTRASLKE DRPNKGYNKN MDGTAECDAD  120
KSYDTRMSPD LDGRRSHGSD LSDRNDWIRS VRGRSRSRSW SRSPPHGNKR DSGFHDRNRN  180
RTRVSTQLCR DFTSGRCRRG NGCQFLHQDD QNLDDSLENR NRKGGRSFRS NSHDFKDHPR  240
SGRSAAHCTD FVKGRCHRGA SCTFSHDSAF HELSRDSPND IARDRKNDRS KEVYFSRGER  300
EPCSSSLVIC KYFAAGSCRN GKNCKYSHHS QPRASPERKS STDKWEHVQC SDGREQSWDG  360
LKSSELASGS DFTQLIEDKK EETASEEPRY TWPSDKKCDH GLNNESKTRW DRAVDIKTVR  420
SNKNDAIPSK VENAGGCTGS SDPRGHRKWP SDDMEMSPDW HYPVQPSNHV VKGDCNVMQD  480
SGSQTSTALA ISHAIVQEAL AKNQDIAIEP IVVDITHFRK NHTLTKDDTI ASASNDNITI  540
DRTVASHAEG NPSGNVVLGQ RMAYHSDHPD GTVTNPKISD GNFRVKLQKE DESMPGINSG  600
TTVTPNIVTN DQIRQITDLS ASLAQYFGNA QPLPQLYASL NAQSVSEAPS FPYSDASVGA  660
LGASMKTAPV IESSKQHDSA LCNSLQLKKL EVTKTPQKST TEVKGEVQIP NLPLSSGPCG  720
ISAEETLHGK PTADGDAIKE KNGDGDNENK TDPATNEDSQ KIDTTENANG NDEIHDKKKS  780
KDTKGIRAFK FALVEFVKEL LKPTWKEGHI SKDVYKTIVK KVVDKVTGSL QDGHIPQTQE  840
KIDHYLSFSK SKLTKLVQAY VDRVQKTT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	5e-11	C3H family protein