PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023543512.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | C3H | ||||||||
Protein Properties | Length: 873aa MW: 97065.2 Da PI: 7.9533 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.5 | 4.2e-07 | 308 | 329 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++fa+ G C+ G +Ck++H XP_023543512.1 308 VICKYFAA-GSCRNGKNCKYSHH 329 58**9999.*************5 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 873 aa Download sequence |
MFILPVFRRK SLRVMSGSGR KHSSKWDLRE DSHFEADSVQ DHSWPGKESR PGWISAEIAS 60 DDGSKWSGMA TTNTVSKPMQ DWGLLSEEEP LPGTRASLKE DRPNKGYNKN MDGTAECDAD 120 KSYDTRMSPD LDGRRSHGSD LSDRNDWIRS VRGRSRSRSW SRSPPHGNKR DSGFHDRNRN 180 RTRVSTQLCR DFTSGRCRRG NGCQFLHQDD QNLDDSLENR NRKGGRSFRS NSHDFKDHPR 240 SGRSAAHCTD FVKGRCHRGA SCTFSHDSAF HELSRDSPND IARDRKNDRS KEVYFSRGER 300 EPCSSSLVIC KYFAAGSCRN GKNCKYSHHS QPRASPERKS STDKWEHVQC SDGREQSWDG 360 LKSSELASGS DFTQLIEDKK EETASEEPRY TWPSDKKCDH GLNNESKTRW DRAVDIKTVR 420 SNKNDAIPSK VENAGGCTGS SDPRGHRKWP SDDMEMSPDW HYPVQPSNHV VKGDCNVMQD 480 SGSQTSTALA ISHAIVQEAL AKNQDIAIEP IVVDITHFRK NHTLTKDDTI ASASNDNITI 540 DRTVASHAEG NPSGNVVLGQ RMAYHSDHPD GTVTNPKISD GNFRVKLQKE DESMPGINSG 600 TTVTPNIVTN DQIRQITDLS ASLAQYFGNA QPLPQLYASL NAQSVSEAPS FPYSDASVGA 660 LGASMKTAPV IESSKQHDSA LCNSLQLKKL EVTKTPQKST TEVKGEVQIP NLPLSSGPCG 720 ISAEETLHGK PTADGDAIKE KNGDGDNENK TDPATNEDSQ KIDTTENANG NDEIHDKKKS 780 KDTKGIRAFK FALVEFVKEL LKPTWKEGHI SKDVYKTIVK KVVDKVTGSL QDGHIPQTQE 840 KIDHYLSFSK SKLTKLVQVM HILKIQLVAT ITF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 8e-09 | C3H family protein |