PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023543258.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MIKC_MADS

Protein Properties

Length: 608aa MW: 68222.3 Da PI: 9.195

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023543258.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	80.5	1.1e-25	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n+ rqvtfskRr+g++KKA+ELS+LCdae a+iifss+gk ye++s XP_023543258.1 10 RIDNSASRQVTFSKRRKGLIKKAKELSILCDAELALIIFSSSGKQYEFAS 59 8***********************************************86 PP
2	K-box	71.6	2.3e-24	84	170	12	98
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++ + +q+e++ L++++ +Lq+++R+l+Ge+L Ls+k+L++Le+qLe sl++iR kK+++l ++i+el +k ++++n +L +k+ XP_023543258.1 84 SDVKLWQKEVSALRQQLLKLQENNRKLMGEQLYGLSIKDLNSLESQLEFSLQSIRIKKEQILNDEIKELNRKGILMHQQNVELANKV 170 56678******************************************************************************9997 PP

Sequence ? help Back to Top
Protein Sequence Length: 608 aa Download sequence
MGRGKIVIRR IDNSASRQVT FSKRRKGLIK KAKELSILCD AELALIIFSS SGKQYEFAST 60 SIESVIEKYN TRKEEDELLL NPISDVKLWQ KEVSALRQQL LKLQENNRKL MGEQLYGLSI 120 KDLNSLESQL EFSLQSIRIK KEQILNDEIK ELNRKGILMH QQNVELANKV NLFCQENIEL 180 QMQAVGSVMT NKYSEGYPGA RYYGGNEYID MAESLCQKRA LEAFRLDPEK WGVNVQSLSG 240 SPSNFQVYTA LLKPHDRIMA LDLPHGGHLS HGYQTDTKKI SAVSIFFETM PYRLDESTGY 300 IDYDQMERSA ALFRPKLIVA GASAYARLYD YARIRKVCDK QKAIMLADMA HISGLVAAGV 360 IPSPFEYADV VTTTTHKSLR GPRGAMIFFR KGVKEINKQG REVLYDYEDK INQAVFPGLQ 420 GGPHNHTIAG LAVALKQATT PEYKAYQEQV LRNCSTFAQS LVEKGYELVS GGTENHLVLV 480 NLKNKGIDGS RVEKVLESVH IAANKNTVPG DVSAMVPGGI RMGTPALTSR GFVEDDFAKV 540 AEFFDAAVSL AVKIKAETKG TKLKDFLTTM QSTPYVQSEI EKLRHDVEEY AKKFPTIGFE 600 KETMKYKS

Sequence ? help Back to Top

Protein Sequence Length: 608 aa Download sequence

MGRGKIVIRR IDNSASRQVT FSKRRKGLIK KAKELSILCD AELALIIFSS SGKQYEFAST  60
SIESVIEKYN TRKEEDELLL NPISDVKLWQ KEVSALRQQL LKLQENNRKL MGEQLYGLSI  120
KDLNSLESQL EFSLQSIRIK KEQILNDEIK ELNRKGILMH QQNVELANKV NLFCQENIEL  180
QMQAVGSVMT NKYSEGYPGA RYYGGNEYID MAESLCQKRA LEAFRLDPEK WGVNVQSLSG  240
SPSNFQVYTA LLKPHDRIMA LDLPHGGHLS HGYQTDTKKI SAVSIFFETM PYRLDESTGY  300
IDYDQMERSA ALFRPKLIVA GASAYARLYD YARIRKVCDK QKAIMLADMA HISGLVAAGV  360
IPSPFEYADV VTTTTHKSLR GPRGAMIFFR KGVKEINKQG REVLYDYEDK INQAVFPGLQ  420
GGPHNHTIAG LAVALKQATT PEYKAYQEQV LRNCSTFAQS LVEKGYELVS GGTENHLVLV  480
NLKNKGIDGS RVEKVLESVH IAANKNTVPG DVSAMVPGGI RMGTPALTSR GFVEDDFAKV  540
AEFFDAAVSL AVKIKAETKG TKLKDFLTTM QSTPYVQSEI EKLRHDVEEY AKKFPTIGFE  600
KETMKYKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37940.1	2e-68	MIKC_MADS family protein