PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023543255.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family SRS
Protein Properties Length: 328aa    MW: 35651.9 Da    PI: 6.7236
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023543255.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702232.95.5e-721042543154
          DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstklssaes 96 
                      g++sCqdCGnqakkdC+h+RCRtCCksrgf+C+thvkstWvpaakrrerq++laa++++++ +   ++++kr+r+ + +++s+l++t +++++s
  XP_023543255.1 104 GGGISCQDCGNQAKKDCVHMRCRTCCKSRGFHCETHVKSTWVPAAKRRERQEKLAALQTQHQLHLhGDNNPKRHRDYNPTSSSSLACTLIPNNTS 198
                     5789***************************************************99988777664788899*******************9986 PP

          DUF702  97 kkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                        le+ ++P+e++s+avfrcvrvss d++++++aYqtav+igGhvfkGiLydqG+e+
  XP_023543255.1 199 G--LEIGNFPAELNSPAVFRCVRVSSTDESDDQYAYQTAVNIGGHVFKGILYDQGPET 254
                     5..88999************************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    
MSGFFSLGGG GREDHQDHQD HQDHQDHQDH QQNNDTNPET LFWYKGNVEL WQQQHHHHQH  60
PQQEQPLFQT QSRTPYSAAL PVRTSDESSS RSGNFMMIGS GSGGGGISCQ DCGNQAKKDC  120
VHMRCRTCCK SRGFHCETHV KSTWVPAAKR RERQEKLAAL QTQHQLHLHG DNNPKRHRDY  180
NPTSSSSLAC TLIPNNTSGL EIGNFPAELN SPAVFRCVRV SSTDESDDQY AYQTAVNIGG  240
HVFKGILYDQ GPETNYIPPA ETSSGGGGGG GGSSSGVQPL NFITGATDAT TASGGSSAAL  300
PLLDPSSLYS TPLNSFMAGT QFFLPPRS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66350.18e-69SRS family protein