PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023542929.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C2H2

Protein Properties

Length: 314aa MW: 36377.5 Da PI: 8.2613

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023542929.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	20.9	9.4e-07	22	42	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ Cg F+ + +Lk+H+++H XP_023542929.1 22 CHECGAAFKKPAYLKQHMQSH 42 *******************99 PP
2	zf-C2H2	15.8	3.9e-05	48	72	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y C+ C s++rk++L+rH+ H XP_023542929.1 48 YICTvdGCEVSYRRKDHLTRHLLQH 72 899999***************9887 PP
3	zf-C2H2	14.4	0.00011	77	102	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 +kCp +C++ F s L+rH+++ H XP_023542929.1 77 FKCPmeNCSREFAYLSCLNRHLKVfH 102 89*********************988 PP
4	zf-C2H2	20.6	1.2e-06	115	139	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++Cp Cgk F+ s+L++H +H XP_023542929.1 115 FVCPedGCGKEFRYASQLQKHEDSH 139 89*******************9888 PP
5	zf-C2H2	17.2	1.4e-05	207	231	2	23
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 +C+ C+ +Fs++snL++H ++ H XP_023542929.1 207 RCTyeGCSNVFSTSSNLRQHVKVvH 231 688889***************9988 PP

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence
MESGKYKDDG DDMAKDRKSN ICHECGAAFK KPAYLKQHMQ SHSLERPYIC TVDGCEVSYR 60 RKDHLTRHLL QHQGMIFKCP MENCSREFAY LSCLNRHLKV FHEGDTPEVE CQKRFVCPED 120 GCGKEFRYAS QLQKHEDSHA KLDSIEACCS ELGCMKTFTN KQCLKAHMQS CHQYIECEIC 180 GEKKLRKNIK QHLRQKHESD GPQTTIRCTY EGCSNVFSTS SNLRQHVKVV HLGRKPFACC 240 FPGCGMRFGY KHVRDNHEKS GQHVYTDGDF EVADERFRSK PRGGRKRVCP TVEMLIRKRV 300 TPPTELNFMM DDDC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72050.2	1e-119	C2H2 family protein