PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023542921.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family TCP
Protein Properties Length: 309aa    MW: 35870.6 Da    PI: 7.9914
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023542921.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP127.41.5e-39892093130
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaaks 97 
                       kdrhski+T++g+RdRR+Rls+e+a+ fFdLqd+LGfdk+skt+eWL+ ++  aikel +  + s+       ++ ++s++ s+  +k +  +
  XP_023542921.1  89 SNKDRHSKICTSKGPRDRRMRLSIEIARSFFDLQDMLGFDKASKTVEWLFAKSRSAIKELKEK-FLSE------GHNYNKSFDFSPLFRKVSVFE 176
                     579************************************************************.3333......233444444555333344444 PP

             TCP  98 kksqksaasalnlakesrakarararertrekm 130
                      +++k+  + + ++kesr++arararertr k 
  XP_023542921.1 177 APREKKRRKLRVVDKESRSRARARARERTRAKI 209
                     455555555689******************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    
MLASNTNQIH DEHESHQLSL QFIDYYNFDP FLDEDFILSQ ILYTQKQQFL DANNFEPEIG  60
FEISVNNTNE EITQKALPQK KPISRKRSSN KDRHSKICTS KGPRDRRMRL SIEIARSFFD  120
LQDMLGFDKA SKTVEWLFAK SRSAIKELKE KFLSEGHNYN KSFDFSPLFR KVSVFEAPRE  180
KKRRKLRVVD KESRSRARAR ARERTRAKIV RRLEISKCDF EGNPIGDCMM GDVSEEIGTK  240
NKIFEFERSQ NERFLSSNVE NSADDHVHLL PCSSMDMSSM SLDSTKASPA GLKLLELDEI  300
DGVLIFYGE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1181185KKRRK
2194204RSRARARARER
3196208RARARARERTRAK
4196206RSRARARARER
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.13e-31TCP family protein