PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023542554.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C2H2

Protein Properties

Length: 1557aa MW: 174638 Da PI: 8.4321

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023542554.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.9	0.00033	1466	1488	3	23
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 Cp Cgk F ++ +L++H r+H XP_023542554.1 1466 CPvkGCGKKFFSHKYLVQHRRVH 1488 9999*****************99 PP
2	zf-C2H2	11.6	0.00089	1524	1550	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 y+C Cg++F+ s++ rH r+ H XP_023542554.1 1524 YVCAeqGCGQTFRFVSDFSRHKRKtgH 1550 89********************99666 PP

Sequence ? help Back to Top
Protein Sequence Length: 1557 aa Download sequence
MAASAMAAEP TPEVLSWLKT LPLAPEYHPT LAEFQDPISY IFKIEKEASK FGICKIVPPV 60 LPSPKKTVIL NFNKSLAARA PCSDSINTKS PPTFTTRQQQ IGFCPRKTRP VQKPVWQSGE 120 YYTFQQFEAK AKAFEKSYLK KCTKKGGLSP LELETLYWRA TLDKPFSVEY ANDMPGSAFV 180 PVSTKMFREA GDGTTLGETA WNMRAVSRAK GSLLKFMKEE IPGVTSPMVY VAMLFSWFAW 240 HVEDHDLHSL NYLHMGAGKT WYGVPRDAAV AFEEVVRVQG YGGEINPLVT FAILGEKTTV 300 MSPEVLVSSG VPCCRLVQNA GEFVVTFPRA YHTGFSHGFN CAEAANIATP EWLRVAKDAA 360 IRRASINYPP MVSHFQLLYD LALSSRSPLC TGSEPRSSRL KDKRRSEGET VIKELFVQNI 420 LENNSLLDVL GSGVSVVLLP QGSSDSIYSR LRVGSHMRGK LRFPAGFCNS KEEAESPQSF 480 DYDNLTLENS QGMNRVKSLY SVNGLYSTLS ERSTGNLCAS SSRILNATNE RGGSVHCDGL 540 SDQRLFSCVT CGILSFACVA IVQPREQAAR YLMSADCSFF NDWVVGSGIT GEGIAIRDGH 600 GVASNSGKRE RCVADGLYDV PVQAVNRQLP VADQSYKANF NTEKRNETSA LGMLALTYGH 660 SSDSEEDNAE PDAALHANDA KPTICSSVDQ YQFENSGLTS SEYCKNSATS NHDPLSANSA 720 DQMQFQVNDY EEFGRARFDS KDSFNCSLEF EIDGVGSTKK NDLSTRYQDS HVNGKPSLDT 780 DTEKPMFEQS AEPVEIENMP FAPDIDEDSS RLHVFCLEHA KEVEQQLRPI GGVHILLLCH 840 QDYPKMEAEA KLMAQELSID HLWTDTTFRD ATQDEKKRIQ LALDSEEAIP GNGDWAVKLG 900 INLFYSANLS HSPLYSKQMP YNSVIYNAFG RSTSANSSGK PKVYQRRSGK LKRVVVGKWC 960 GRVWMSNQIH PLLAKRDPQE EDVDGFPSWT MSDEKIEWKS DNIQKSETVN RKSAGKRKMT 1020 YGSGAATKKA EPIESEDIVS DNSGEDCIRQ HHRILQNKRS KIVASKDAMS DDSVEDVSYK 1080 KHGRVPVNEE AYCETDDPGS DDGPDESLGG RHTKLHRGFY GFKLPKWGEI EPAVSDDSLE 1140 RDSSQFRGKM SKSKIDKYVE RQDALSDECL ESPLKQYRRI PKSKQAKVVK KNVISHDIRD 1200 DSFLWHRQGT SRSKMATIDS EDAVSEDSFE NSSHQLMSTP RSKSAKRTAR ENVFSDDPDE 1260 DDTSLLHHRK NVRNVQSKYF ERENTPDDQL DDSANQCRTR VLRSKPVKKE TISQTKQEIL 1320 RPAKRGASRT LKEEFSQPLK RGGRHTLKLE TPQPTKQLAP NRRGKQAKRN NKLTDLESEE 1380 EQQLGGPSTR LRQRTPKPTK FSETKPNDKK PIGKKKVKNA SSLKTPAGHR DSKARDEESE 1440 YLCDIEGCNM SFGSKQELVL HKRNICPVKG CGKKFFSHKY LVQHRRVHMD DRPLKCPWRG 1500 CKMTFKWAWA RTEHIRVHTG DRPYVCAEQG CGQTFRFVSD FSRHKRKTGH STKKGRG

Sequence ? help Back to Top

Protein Sequence Length: 1557 aa Download sequence

MAASAMAAEP TPEVLSWLKT LPLAPEYHPT LAEFQDPISY IFKIEKEASK FGICKIVPPV  60
LPSPKKTVIL NFNKSLAARA PCSDSINTKS PPTFTTRQQQ IGFCPRKTRP VQKPVWQSGE  120
YYTFQQFEAK AKAFEKSYLK KCTKKGGLSP LELETLYWRA TLDKPFSVEY ANDMPGSAFV  180
PVSTKMFREA GDGTTLGETA WNMRAVSRAK GSLLKFMKEE IPGVTSPMVY VAMLFSWFAW  240
HVEDHDLHSL NYLHMGAGKT WYGVPRDAAV AFEEVVRVQG YGGEINPLVT FAILGEKTTV  300
MSPEVLVSSG VPCCRLVQNA GEFVVTFPRA YHTGFSHGFN CAEAANIATP EWLRVAKDAA  360
IRRASINYPP MVSHFQLLYD LALSSRSPLC TGSEPRSSRL KDKRRSEGET VIKELFVQNI  420
LENNSLLDVL GSGVSVVLLP QGSSDSIYSR LRVGSHMRGK LRFPAGFCNS KEEAESPQSF  480
DYDNLTLENS QGMNRVKSLY SVNGLYSTLS ERSTGNLCAS SSRILNATNE RGGSVHCDGL  540
SDQRLFSCVT CGILSFACVA IVQPREQAAR YLMSADCSFF NDWVVGSGIT GEGIAIRDGH  600
GVASNSGKRE RCVADGLYDV PVQAVNRQLP VADQSYKANF NTEKRNETSA LGMLALTYGH  660
SSDSEEDNAE PDAALHANDA KPTICSSVDQ YQFENSGLTS SEYCKNSATS NHDPLSANSA  720
DQMQFQVNDY EEFGRARFDS KDSFNCSLEF EIDGVGSTKK NDLSTRYQDS HVNGKPSLDT  780
DTEKPMFEQS AEPVEIENMP FAPDIDEDSS RLHVFCLEHA KEVEQQLRPI GGVHILLLCH  840
QDYPKMEAEA KLMAQELSID HLWTDTTFRD ATQDEKKRIQ LALDSEEAIP GNGDWAVKLG  900
INLFYSANLS HSPLYSKQMP YNSVIYNAFG RSTSANSSGK PKVYQRRSGK LKRVVVGKWC  960
GRVWMSNQIH PLLAKRDPQE EDVDGFPSWT MSDEKIEWKS DNIQKSETVN RKSAGKRKMT  1020
YGSGAATKKA EPIESEDIVS DNSGEDCIRQ HHRILQNKRS KIVASKDAMS DDSVEDVSYK  1080
KHGRVPVNEE AYCETDDPGS DDGPDESLGG RHTKLHRGFY GFKLPKWGEI EPAVSDDSLE  1140
RDSSQFRGKM SKSKIDKYVE RQDALSDECL ESPLKQYRRI PKSKQAKVVK KNVISHDIRD  1200
DSFLWHRQGT SRSKMATIDS EDAVSEDSFE NSSHQLMSTP RSKSAKRTAR ENVFSDDPDE  1260
DDTSLLHHRK NVRNVQSKYF ERENTPDDQL DDSANQCRTR VLRSKPVKKE TISQTKQEIL  1320
RPAKRGASRT LKEEFSQPLK RGGRHTLKLE TPQPTKQLAP NRRGKQAKRN NKLTDLESEE  1380
EQQLGGPSTR LRQRTPKPTK FSETKPNDKK PIGKKKVKNA SSLKTPAGHR DSKARDEESE  1440
YLCDIEGCNM SFGSKQELVL HKRNICPVKG CGKKFFSHKY LVQHRRVHMD DRPLKCPWRG  1500
CKMTFKWAWA RTEHIRVHTG DRPYVCAEQG CGQTFRFVSD FSRHKRKTGH STKKGRG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48430.1	0.0	C2H2 family protein