PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023542369.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family GATA
Protein Properties Length: 353aa    MW: 38408.1 Da    PI: 6.8399
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023542369.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA551.1e-17258291134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  XP_023542369.1 258 CMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 291
                     99*****************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    
MVGNSFVDDL DCGSFFDHID DLLDFPVEDV DAGLPPAKGG DSGNSFPTIW STQSEALPGS  60
DSVFSANRNS DLSADLSVPY EDIVQLEWLS NFVEDSFCGG GSLATMSKEE PKDLTHTQFQ  120
TSSPVSVLES SSSCSSDKSL PRSPEPTIAT PAQQRGRARS KRPRPATFCP RPPIQLISPA  180
SSVSETTHDH HHQVLQVIAP KTTSDSDNFA ESRPLNKMPK HGALGMQKKN KKIKLSFSLA  240
PLDGVASQNS PSQSMRKCMH CEITKTPQWR AGPMGPKTLC NACGVRYKSG RLFPEYRPAA  300
SPTFVPSLHS NSHKKVLEMR NKTDEKTAAN VITITVQPEL IPNTNSAISM DYM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161165KRPRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.15e-45GATA family protein