PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023542317.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C2H2

Protein Properties

Length: 368aa MW: 42283 Da PI: 6.7059

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023542317.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.4	0.0005	79	101	3	23
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 C+ Cgk+F + L++H H XP_023542317.1 79 CSyeGCGKTFIDAGALRKHSHIH 101 77779**************7766 PP
2	zf-C2H2	16.5	2.4e-05	106	130	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C+ Cgk F ++s LkrH H XP_023542317.1 106 YVCHyeGCGKKFLDSSKLKRHFLIH 130 9********************8877 PP
3	zf-C2H2	21.7	5.2e-07	136	160	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++Cp Cgk Fs nL++H++tH XP_023542317.1 136 FVCPheGCGKAFSLDFNLRSHMKTH 160 89**********************9 PP
4	zf-C2H2	18.8	4.5e-06	166	190	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 + Cp dCgk+F + + Lk+Hi +H XP_023542317.1 166 HICPypDCGKRFAHEYKLKNHITSH 190 679999*****************96 PP
5	zf-C2H2	13.9	0.00016	229	254	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 y Cp C k + + + Lk H+r+ H XP_023542317.1 229 YACPyeGCEKAYIHEYKLKLHLRReH 254 89**********************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence
METYFNHNLF ERRPIVKNKT PAAKWIKEWV PQDVVATGGK CFLLKWVTED TLKALKEKTK 60 QSEAPEPEPE PTTEVLFLCS YEGCGKTFID AGALRKHSHI HGERQYVCHY EGCGKKFLDS 120 SKLKRHFLIH TGERDFVCPH EGCGKAFSLD FNLRSHMKTH SQENYHICPY PDCGKRFAHE 180 YKLKNHITSH HEKNMTAEVV KYTPPTEKQT KVSKPSGGAY ASASSDRPYA CPYEGCEKAY 240 IHEYKLKLHL RREHPGHLVE DNGNAHHNGE NEIEGSDQDG YGGKRVNTKN QKQNKPKPKL 300 KLPPSKISQR KGTTSSPAPI SVKKSWPAKE ETYEEEDSEE TEEDRENVEE GWQYAENEDD 360 DEETEYED

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence

METYFNHNLF ERRPIVKNKT PAAKWIKEWV PQDVVATGGK CFLLKWVTED TLKALKEKTK  60
QSEAPEPEPE PTTEVLFLCS YEGCGKTFID AGALRKHSHI HGERQYVCHY EGCGKKFLDS  120
SKLKRHFLIH TGERDFVCPH EGCGKAFSLD FNLRSHMKTH SQENYHICPY PDCGKRFAHE  180
YKLKNHITSH HEKNMTAEVV KYTPPTEKQT KVSKPSGGAY ASASSDRPYA CPYEGCEKAY  240
IHEYKLKLHL RREHPGHLVE DNGNAHHNGE NEIEGSDQDG YGGKRVNTKN QKQNKPKPKL  300
KLPPSKISQR KGTTSSPAPI SVKKSWPAKE ETYEEEDSEE TEEDRENVEE GWQYAENEDD  360
DEETEYED

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G06634.1	1e-142	C2H2 family protein