PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023542114.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

TCP

Protein Properties

Length: 525aa MW: 55220.3 Da PI: 7.3465

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023542114.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	127.2	1.7e-39	136	273	5	111
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.......... 88 k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++ + s +ss+s+ s++ XP_023542114.1 136 KRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSsLNISIRSSGSTLSAPpsksaphsfh 230 89****************************************************************88875555555555444445555567777 PP TCP 89 ......................kaaksaakskksqksaasalnla 111 +++++++q++++++lnl+ XP_023542114.1 231 galalahhpnayeegfahaallGF--HHHHHHQQQQQHHHQLNLM 273 776666666666666665543311..1112223333333334444 PP

Sequence ? help Back to Top
Protein Sequence Length: 525 aa Download sequence
MELTDMQQSN KQQQQQQQHH HHSNQNQKPP PPPPPPQQQQ QQQHHVVPFD GRSAAAGGGP 60 PFMGSISTLV SLPPPSSSAS NSTSNSSSSS SSSAVAPPPH LLDASLVIAT RSDTTTNPSP 120 RSASASASTS NANALKRSTK DRHTKVDGRG RRIRMPATCA ARVFQLTREL GHKSDGETIE 180 WLLQQAEPAI IAATGTGTIP ANFSSLNISI RSSGSTLSAP PSKSAPHSFH GALALAHHPN 240 AYEEGFAHAA LLGFHHHHHH QQQQQHHHQL NLMTADQIAD ALPGGESGGG GGGGDSTDNY 300 MRKRYREDLF KEDTQSPGES SGGAGSPKAI KSDLQLEKQQ SQQQSASSSL LRPATAMWAV 360 APSSGASNTF WMLPVTTGSG GANVGSSGAS GGPMEAQMWP FSTSANTLQA PLHFMPRFNI 420 PGGVEIQAAG AAAGGGGRAG QLQLGSMLMH QQQQQQQQQQ QQQQLGLGVS ESNLGVLAAL 480 NAAYSRGGFN ANSDHHHNHH PLEHHSNAPQ PHATDSGDED PNTSQ

Sequence ? help Back to Top

Protein Sequence Length: 525 aa Download sequence

MELTDMQQSN KQQQQQQQHH HHSNQNQKPP PPPPPPQQQQ QQQHHVVPFD GRSAAAGGGP  60
PFMGSISTLV SLPPPSSSAS NSTSNSSSSS SSSAVAPPPH LLDASLVIAT RSDTTTNPSP  120
RSASASASTS NANALKRSTK DRHTKVDGRG RRIRMPATCA ARVFQLTREL GHKSDGETIE  180
WLLQQAEPAI IAATGTGTIP ANFSSLNISI RSSGSTLSAP PSKSAPHSFH GALALAHHPN  240
AYEEGFAHAA LLGFHHHHHH QQQQQHHHQL NLMTADQIAD ALPGGESGGG GGGGDSTDNY  300
MRKRYREDLF KEDTQSPGES SGGAGSPKAI KSDLQLEKQQ SQQQSASSSL LRPATAMWAV  360
APSSGASNTF WMLPVTTGSG GANVGSSGAS GGPMEAQMWP FSTSANTLQA PLHFMPRFNI  420
PGGVEIQAAG AAAGGGGRAG QLQLGSMLMH QQQQQQQQQQ QQQQLGLGVS ESNLGVLAAL  480
NAAYSRGGFN ANSDHHHNHH PLEHHSNAPQ PHATDSGDED PNTSQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	1e-62	TCP family protein