PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023542036.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C2H2

Protein Properties

Length: 450aa MW: 50993.1 Da PI: 9.8347

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023542036.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.5	0.0001	388	410	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kCp+C+k F++ L H r+H XP_023542036.1 388 HKCPICSKAFKSGQALGGHKRSH 410 79******************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 450 aa Download sequence
MENSKENKFV CNFCHKIFTC GKSLGGHIRI HKNEKAPRVA EKQKERTSIV KLQVPIERRR 60 SKRDLESEVA NGNSGYGLRE NPKITRRFAD SVFTSRKEKF CRECGEGFQS SEALCYHLDC 120 HSENKRDNKR LEYDYRIIHQ KRDLIGNQSD ERVQEAAMSL MMMSKALRFS GLEGLNSVSE 180 SSDSKSSSRH FRESDTSTSN SNGRLEMKTH SEYGGENSNS GNFRKELCKK VKLKVSINGP 240 FMDDEYKIPD VKFGVRIGRS SADILKNSMK TQKSYDKVPA ASYKYELRKR LRNDLYSPDL 300 WEGSSRKISN DYSIHSGIVR TQHHRESQTR MSNGYEWTHQ SGENSVNITT NSISIPAREI 360 IESSSGKNKS QQDTSGNEEK KLGPKRKHKC PICSKAFKSG QALGGHKRSH VVGSLEDASI 420 VTRQESNGVT GLIDLNVPAP MEEEESGRWG

Sequence ? help Back to Top

Protein Sequence Length: 450 aa Download sequence

MENSKENKFV CNFCHKIFTC GKSLGGHIRI HKNEKAPRVA EKQKERTSIV KLQVPIERRR  60
SKRDLESEVA NGNSGYGLRE NPKITRRFAD SVFTSRKEKF CRECGEGFQS SEALCYHLDC  120
HSENKRDNKR LEYDYRIIHQ KRDLIGNQSD ERVQEAAMSL MMMSKALRFS GLEGLNSVSE  180
SSDSKSSSRH FRESDTSTSN SNGRLEMKTH SEYGGENSNS GNFRKELCKK VKLKVSINGP  240
FMDDEYKIPD VKFGVRIGRS SADILKNSMK TQKSYDKVPA ASYKYELRKR LRNDLYSPDL  300
WEGSSRKISN DYSIHSGIVR TQHHRESQTR MSNGYEWTHQ SGENSVNITT NSISIPAREI  360
IESSSGKNKS QQDTSGNEEK KLGPKRKHKC PICSKAFKSG QALGGHKRSH VVGSLEDASI  420
VTRQESNGVT GLIDLNVPAP MEEEESGRWG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26610.1	3e-24	C2H2 family protein