PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023542000.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | LBD | ||||||||
Protein Properties | Length: 219aa MW: 24106.8 Da PI: 8.0433 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 91.6 | 9.3e-29 | 4 | 106 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C++lr++C++dC+++p++ p++q++++ +++k++G++ + +l++a+ e+ r+++++sl+yeA+ r+ +PvyG+vg++ ++ ++ +q+ XP_023542000.1 4 SCNGCRILRKGCSHDCIIRPCLqwipsPDSQANATIFLAKFYGRAGLFNLITAAAEHLRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDWDKCQA 98 6************************9999****************************************************************** PP DUF260 91 kaelallk 98 +++++l++ XP_023542000.1 99 AVDAVLTG 106 *9998876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence |
MRMSCNGCRI LRKGCSHDCI IRPCLQWIPS PDSQANATIF LAKFYGRAGL FNLITAAAEH 60 LRPAIFKSLL YEACGRMVNP VYGSVGLLCS GDWDKCQAAV DAVLTGSMIV EPDAPLSNTN 120 LSLKCCDIRH VCNDTNLAVP GELHKGKTRN RFKKPDNRTK SKPGPGNELG SGSNVEVIEI 180 DRMADDLMTN RRKPGWVLRN GMWVEEEDVA LELTLNSAQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68510.1 | 1e-63 | LBD family protein |