PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023541176.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

SBP

Protein Properties

Length: 445aa MW: 49860.1 Da PI: 8.9224

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023541176.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.5	1.2e-40	161	237	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 CqvegC+ dls+ak+y+r+h+vCe hsk+p+v++ g+e+rfCqqCsrfh +s+fDe+krsCrrrL++hn+rrrk+q+ XP_023541176.1 161 CQVEGCNIDLSNAKDYYRKHRVCESHSKSPKVIIGGIERRFCQQCSRFHGISDFDEKKRSCRRRLSNHNARRRKPQS 237 **************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 445 aa Download sequence
MEWNARPSLQ WDWENLTVLN PRISGHGDIL HPTNFENKHG INVGSSNSVG DARITGGPFF 60 ELGKTSPKNS KSVSQNSLSI EKSRTTKFTL EGFEPTLEDI DNKYKFVETS ICSCEPMLSL 120 KLGKQAYFEN TSAGNVKKPS VPLMESQATR KRCQNTPSPH CQVEGCNIDL SNAKDYYRKH 180 RVCESHSKSP KVIIGGIERR FCQQCSRFHG ISDFDEKKRS CRRRLSNHNA RRRKPQSKVI 240 SLNPARLSSW DFVERRQIDV FSDKLSLIYP ISRTNSAWES ELNTRHPQCG QYVLKSEQAC 300 GSTGQLNVSR NEMRCVRAMP YHDTSKLVTF KGPATRVLDA AQDLQRALSL LSTDLKGPYE 360 AKLISSDSPN SLSNPNYANQ TATSQSPMDL GIQSLPFASV DSGWPIESQV QVQVQVHHPS 420 NEGSGLLQDL QLFKTPCEIG MFSNS

Sequence ? help Back to Top

Protein Sequence Length: 445 aa Download sequence

MEWNARPSLQ WDWENLTVLN PRISGHGDIL HPTNFENKHG INVGSSNSVG DARITGGPFF  60
ELGKTSPKNS KSVSQNSLSI EKSRTTKFTL EGFEPTLEDI DNKYKFVETS ICSCEPMLSL  120
KLGKQAYFEN TSAGNVKKPS VPLMESQATR KRCQNTPSPH CQVEGCNIDL SNAKDYYRKH  180
RVCESHSKSP KVIIGGIERR FCQQCSRFHG ISDFDEKKRS CRRRLSNHNA RRRKPQSKVI  240
SLNPARLSSW DFVERRQIDV FSDKLSLIYP ISRTNSAWES ELNTRHPQCG QYVLKSEQAC  300
GSTGQLNVSR NEMRCVRAMP YHDTSKLVTF KGPATRVLDA AQDLQRALSL LSTDLKGPYE  360
AKLISSDSPN SLSNPNYANQ TATSQSPMDL GIQSLPFASV DSGWPIESQV QVQVQVHHPS  420
NEGSGLLQDL QLFKTPCEIG MFSNS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	217	234	KKRSCRRRLSNHNARRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27360.4	3e-46	SBP family protein