PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G27360.4 | ||||||||
Common Name | F17L21.14, SPL11 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | SBP | ||||||||
Protein Properties | Length: 393aa MW: 43864 Da PI: 8.1355 | ||||||||
Description | squamosa promoter-like 11 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 127.8 | 4.1e-40 | 174 | 250 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cq++gCe dls+ak yhr+hkvCe+hsk+p+v vsgle+rfCqqCsrfh++sefDe+krsCr+rL++hn+rrrk+q AT1G27360.4 174 RCQIDGCELDLSSAKGYHRKHKVCEKHSKCPKVSVSGLERRFCQQCSRFHAVSEFDEKKRSCRKRLSHHNARRRKPQ 250 6**************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.5E-32 | 168 | 236 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.129 | 172 | 249 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 3.01E-37 | 173 | 251 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.6E-30 | 175 | 248 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000014 | anatomy | rosette leaf | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0008019 | anatomy | leaf lamina base | ||||
PO:0009005 | anatomy | root | ||||
PO:0009006 | anatomy | shoot system | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0009049 | anatomy | inflorescence | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0020038 | anatomy | petiole | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001054 | developmental stage | vascular leaf senescent stage | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007064 | developmental stage | LP.12 twelve leaves visible stage | ||||
PO:0007098 | developmental stage | LP.02 two leaves visible stage | ||||
PO:0007103 | developmental stage | LP.10 ten leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 393 aa Download sequence Send to blast |
MDCNMVSSSQ WDWEHLIMSN PSRTEDDSKQ LPTEWEIEKG EGIESIVPHF SGLERVSSGS 60 ATSFWHTAVS KSSQSTSINS SSPEAKRCKL ASESSPGDSC SNIDFVQVKA PTALEVSVAS 120 AESDLCLKLG KRTYSEEYWG RNNNEISAVS MKLLTPSVVA GKSKLCGQSM PVPRCQIDGC 180 ELDLSSAKGY HRKHKVCEKH SKCPKVSVSG LERRFCQQCS RFHAVSEFDE KKRSCRKRLS 240 HHNARRRKPQ GVFSMNPERV YDRRQHTNML WNGVSLNARS EEMYEWGNNT YDTKPRQTEK 300 SFTLSFQRGN GSEDQLVASS SRMFSTSQTS GGFPAGKSKF QLHGEDVGEY SGVLHESQDI 360 HRALSLLSTS SDPLAQPHVQ PFSLLCSYDV VPK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 8e-27 | 175 | 248 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 230 | 247 | KKRSCRKRLSHHNARRRK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.497 | 0.0 | flower| inflorescence| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 264444_at | 0.0 | ||||
Expression Atlas | AT1G27360 | - | ||||
AtGenExpress | AT1G27360 | - | ||||
ATTED-II | AT1G27360 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed constitutively during plant development, weak increase during flowering. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:14573523}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | In conjunction with SPL10 and SPL2, SPL11 redundantly controls proper development of lateral organs in association with shoot maturation in the reproductive phase. | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00161 | DAP | 27203113 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G27360.4 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Regulation -- MicroRNA ? help Back to Top | ||||||
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Source | Description | |||||
miRTarBase | Regulated by ath-miR156d |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
IntAct | Search Q9FZK0 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G27360 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ011635 | 0.0 | AJ011635.1 Arabidopsis thaliana (ecotype Columbia) mRNA for squamosa promoter binding protein-like 11. | |||
GenBank | AY070106 | 0.0 | AY070106.1 Arabidopsis thaliana putative squamosa-promoter binding protein 2 (At1g27360) mRNA, complete cds. | |||
GenBank | AY088185 | 0.0 | AY088185.1 Arabidopsis thaliana clone 42666 mRNA, complete sequence. | |||
GenBank | AY091286 | 0.0 | AY091286.1 Arabidopsis thaliana putative squamosa-promoter binding protein 2 (At1g27360) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001077603.1 | 0.0 | squamosa promoter-like 11 | ||||
Refseq | NP_001077604.1 | 0.0 | squamosa promoter-like 11 | ||||
Refseq | NP_564280.1 | 0.0 | squamosa promoter-like 11 | ||||
Refseq | NP_973920.1 | 0.0 | squamosa promoter-like 11 | ||||
Swissprot | Q9FZK0 | 0.0 | SPL11_ARATH; Squamosa promoter-binding-like protein 11 | ||||
TrEMBL | A0A178WBN1 | 0.0 | A0A178WBN1_ARATH; SPL11 | ||||
STRING | AT1G27360.4 | 0.0 | (Arabidopsis thaliana) |
Link Out ? help Back to Top | |
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Phytozome | AT1G27360.4 |
Entrez Gene | 839625 |
iHOP | AT1G27360 |
wikigenes | AT1G27360 |