PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023540850.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

CPP

Protein Properties

Length: 784aa MW: 85434.9 Da PI: 5.6059

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023540850.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	50.8	3.4e-16	486	524	2	40
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+CnCkkskClk+YCeCfaag++C e C+C+dC+Nk XP_023540850.1 486 SCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQDCFNKP 524 689**********************************96 PP
2	TCR	50.5	4e-16	571	609	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN XP_023540850.1 571 RHKRGCNCKKSSCLKKYCECYQGGVGCSISCRCEGCKNA 609 589***********************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 784 aa Download sequence
MDTPERKQIA TTSVSKFEDS PVFNYINNLS PIQPVKSVHT MQTFNSLSFA SLPSVFTSPH 60 VSSYKESRFL RRHSVADLSK PDFTSENGNR VDTNGGVTGS VSQLQENSSA PDGNSDSTEL 120 PSVHPLSTKE EPQAMKSDSA RPDCDQKQPD SVTESGEDPA LIEPYVHNKS GNGSAEAEAN 180 KQVVSLTEER EATGYDWESL ITEGSDLLIF SSPNGSEAIR LVQKPLDLVT GFTSSTLSQI 240 MENDNTNLSK MRIADPIESS GGQREIEFLS SQAGEAREQK DMDRAIDSLS FPNSSNSMSR 300 EITDDEVARY ITDDCKPVSN LYRGMRRRCL DFEAAVSRRK NLEDGSNSGS VSTHPEEKMP 360 SADKQLVPYK SGGVASRCIL TGIGLHLNAL ATASKDAKTL NQEKFSSERQ LNLPNSSASC 420 HSPSTGLDPR LTSVVTERDM DPSENGVHNE EDAVRASAYV LAEDFNQNSP KKKRRRLEHA 480 GETESSCKRC NCKKSKCLKL YCECFAAGVY CIEPCSCQDC FNKPIHEDTV LATRKQIESR 540 NPLAFAPKVI RNSDSLPEPG DESNKTPASA RHKRGCNCKK SSCLKKYCEC YQGGVGCSIS 600 CRCEGCKNAF GRKDGSSLLG LETEQEEEEP ETNQASAMDD KALHGPEIPN NEEQNPGSAI 660 PSTPLQHCRQ LVPLPFSSRS KPLRSSFLNV GSSSGFYTGN KLEKPNILQS QPDPGKNTLP 720 GMEDEMPDIL CGNCSPGAGV KTGSPNSKRI SPPQSDFGLS PLPRTGRKLI LQSIPSFPSL 780 TPQH

Sequence ? help Back to Top

Protein Sequence Length: 784 aa Download sequence

MDTPERKQIA TTSVSKFEDS PVFNYINNLS PIQPVKSVHT MQTFNSLSFA SLPSVFTSPH  60
VSSYKESRFL RRHSVADLSK PDFTSENGNR VDTNGGVTGS VSQLQENSSA PDGNSDSTEL  120
PSVHPLSTKE EPQAMKSDSA RPDCDQKQPD SVTESGEDPA LIEPYVHNKS GNGSAEAEAN  180
KQVVSLTEER EATGYDWESL ITEGSDLLIF SSPNGSEAIR LVQKPLDLVT GFTSSTLSQI  240
MENDNTNLSK MRIADPIESS GGQREIEFLS SQAGEAREQK DMDRAIDSLS FPNSSNSMSR  300
EITDDEVARY ITDDCKPVSN LYRGMRRRCL DFEAAVSRRK NLEDGSNSGS VSTHPEEKMP  360
SADKQLVPYK SGGVASRCIL TGIGLHLNAL ATASKDAKTL NQEKFSSERQ LNLPNSSASC  420
HSPSTGLDPR LTSVVTERDM DPSENGVHNE EDAVRASAYV LAEDFNQNSP KKKRRRLEHA  480
GETESSCKRC NCKKSKCLKL YCECFAAGVY CIEPCSCQDC FNKPIHEDTV LATRKQIESR  540
NPLAFAPKVI RNSDSLPEPG DESNKTPASA RHKRGCNCKK SSCLKKYCEC YQGGVGCSIS  600
CRCEGCKNAF GRKDGSSLLG LETEQEEEEP ETNQASAMDD KALHGPEIPN NEEQNPGSAI  660
PSTPLQHCRQ LVPLPFSSRS KPLRSSFLNV GSSSGFYTGN KLEKPNILQS QPDPGKNTLP  720
GMEDEMPDIL CGNCSPGAGV KTGSPNSKRI SPPQSDFGLS PLPRTGRKLI LQSIPSFPSL  780
TPQH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	470	477	PKKKRRRL
2	471	476	KKKRRR
3	473	477	KRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22780.1	1e-107	CPP family protein