PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023540575.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB_related

Protein Properties

Length: 769aa MW: 85643.2 Da PI: 6.2916

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023540575.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.6	6.1e-08	52	94	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT eE+e + a +q G++ +++I +++ + q++++++ + XP_023540575.1 52 AWTREEEESFFTALRQVGKN-FEKITCHVQ-SKNKDQVRHYYYRL 94 6***************99.*****.*********976 PP

Sequence ? help Back to Top
Protein Sequence Length: 769 aa Download sequence
MQTDSILSSN SETHLLSETI IAHVGDQGIA ASTPDRVIEP LPAKRPTRQW AAWTREEEES 60 FFTALRQVGK NFEKITCHVQ SKNKDQVRHY YYRLVRRMNK LLAPGLCLDA KNSKDTNAAM 120 LRWWSLLEKY SCKASKLHLK PRRFKIFVEA LEHQLLKDRK KTVRKRPLQG ENCPPPMPNA 180 VSNQSRALGH DGRAVKLVLV DTQNIPKLGH RKTASRCNVN VGINRGNNGG YPTVLKPSRP 240 RRKSEGVSSA AYKKWEKAAI AGVSLVADAA EHLERTITNR DVLHNQNTVG EKNSDPAGSP 300 LLLLAPLQPN SLIDVANTKL KLQLFPVDDG TRRALELDKH NPHLELTLST RKKISSVLEH 360 LSRKWGNSSA AHGALMLFPY SMQKKCLAEC QRWTQDSFES AGDVYAAIGR PQVFRLRYGW 420 CSNTEHGSPE LQTSVPAYCI QDDHIIDARD IDGRIVDLAS INDQPVGLNK DEVGTLNDNM 480 STPTVPNETE RFICGRLDDL PRSSDPTLNI SWDKKDVADR TFIRRSDDVD DLKLSNETSL 540 SAGEWADSLT NINIGDLLSG VSQDVDPNCI DTPLAEGIQC LQQIPFSCDS FDAAIAAHIS 600 RQQDKTVSQP TLASHVSSIW DAEETCDAFS FQKNPVILQE VPSSSPFSSL QGYKHIARTY 660 SMESSHMAEE LLSDSPPEDH NQGDPMDECQ SDPQISETKD LNELADIYWP DSLGPLDLDL 720 PSTNKYHSED LILGDSLSSL NRLIASSLDA FQNCSFFGLD KKESSTFNS

Sequence ? help Back to Top

Protein Sequence Length: 769 aa Download sequence

MQTDSILSSN SETHLLSETI IAHVGDQGIA ASTPDRVIEP LPAKRPTRQW AAWTREEEES  60
FFTALRQVGK NFEKITCHVQ SKNKDQVRHY YYRLVRRMNK LLAPGLCLDA KNSKDTNAAM  120
LRWWSLLEKY SCKASKLHLK PRRFKIFVEA LEHQLLKDRK KTVRKRPLQG ENCPPPMPNA  180
VSNQSRALGH DGRAVKLVLV DTQNIPKLGH RKTASRCNVN VGINRGNNGG YPTVLKPSRP  240
RRKSEGVSSA AYKKWEKAAI AGVSLVADAA EHLERTITNR DVLHNQNTVG EKNSDPAGSP  300
LLLLAPLQPN SLIDVANTKL KLQLFPVDDG TRRALELDKH NPHLELTLST RKKISSVLEH  360
LSRKWGNSSA AHGALMLFPY SMQKKCLAEC QRWTQDSFES AGDVYAAIGR PQVFRLRYGW  420
CSNTEHGSPE LQTSVPAYCI QDDHIIDARD IDGRIVDLAS INDQPVGLNK DEVGTLNDNM  480
STPTVPNETE RFICGRLDDL PRSSDPTLNI SWDKKDVADR TFIRRSDDVD DLKLSNETSL  540
SAGEWADSLT NINIGDLLSG VSQDVDPNCI DTPLAEGIQC LQQIPFSCDS FDAAIAAHIS  600
RQQDKTVSQP TLASHVSSIW DAEETCDAFS FQKNPVILQE VPSSSPFSSL QGYKHIARTY  660
SMESSHMAEE LLSDSPPEDH NQGDPMDECQ SDPQISETKD LNELADIYWP DSLGPLDLDL  720
PSTNKYHSED LILGDSLSSL NRLIASSLDA FQNCSFFGLD KKESSTFNS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	239	243	RPRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36960.3	0.0	MYB_related family protein