PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023540436.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

bHLH

Protein Properties

Length: 621aa MW: 68117.6 Da PI: 6.5347

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023540436.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.4	1.1e-12	450	495	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ K++Ka+ L Av YI++L XP_023540436.1 450 NHVEAERQRREKLNQKFYALRAVVPNV-----SKMDKASLLGDAVSYINEL 495 799*********************6.....5*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 621 aa Download sequence
MTDYRFSTMN LWTDENASAM DAFTNSDLSS YWAPSAASSQ SLHHPPPTQS SASTTTPPSV 60 PSKSIAVLNQ ETLQQRLQAL IDGARESWTY AIFWQSSYDY SGGSVLGWGD GYYKGEENKG 120 RGKTKMVSSA AEQAHRKKVL RELNSLISGS ATGLDDVVDE EVTDTEWFFL VSMTQSFVNG 180 VGLPSQALLS SRPIWISGAD RLSASACDRA RQGRIFGLQT MVCIPLPNGV VEMGSTEAIY 240 ITTDLMNKVK TLFNFNNLET GSWQSGTTGV TVADEGENDP SSLWISEPSS TIEMKDSITT 300 TVLSGGASAK PIHSENPSSS SLTENASRKQ TPSLNFPDYA AAAATTNPSF KSESGGMLSF 360 GNKSLFSGNS QNEKKKSPSS RRTTDEGILC FTSDAILPFF GKVKSGDSDH SDPEASAIPE 420 VDSCIKPSEP EKRPRKRGRK PANGREEPLN HVEAERQRRE KLNQKFYALR AVVPNVSKMD 480 KASLLGDAVS YINELKLKLE MAESKKTEIE KQLEFMKKDG GTGRKDIGNY TNTVNEDLKM 540 EIQVKIMGSD AMIRVECSKK NHPAARLMAA LKDLDLEMIH ASVSVVNDLM IQQAAVKMES 600 RVYTTEQLKM VLMAEVRRCR R

Sequence ? help Back to Top

Protein Sequence Length: 621 aa Download sequence

MTDYRFSTMN LWTDENASAM DAFTNSDLSS YWAPSAASSQ SLHHPPPTQS SASTTTPPSV  60
PSKSIAVLNQ ETLQQRLQAL IDGARESWTY AIFWQSSYDY SGGSVLGWGD GYYKGEENKG  120
RGKTKMVSSA AEQAHRKKVL RELNSLISGS ATGLDDVVDE EVTDTEWFFL VSMTQSFVNG  180
VGLPSQALLS SRPIWISGAD RLSASACDRA RQGRIFGLQT MVCIPLPNGV VEMGSTEAIY  240
ITTDLMNKVK TLFNFNNLET GSWQSGTTGV TVADEGENDP SSLWISEPSS TIEMKDSITT  300
TVLSGGASAK PIHSENPSSS SLTENASRKQ TPSLNFPDYA AAAATTNPSF KSESGGMLSF  360
GNKSLFSGNS QNEKKKSPSS RRTTDEGILC FTSDAILPFF GKVKSGDSDH SDPEASAIPE  420
VDSCIKPSEP EKRPRKRGRK PANGREEPLN HVEAERQRRE KLNQKFYALR AVVPNVSKMD  480
KASLLGDAVS YINELKLKLE MAESKKTEIE KQLEFMKKDG GTGRKDIGNY TNTVNEDLKM  540
EIQVKIMGSD AMIRVECSKK NHPAARLMAA LKDLDLEMIH ASVSVVNDLM IQQAAVKMES  600
RVYTTEQLKM VLMAEVRRCR R

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	432	440	KRPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32640.1	1e-179	bHLH family protein