PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023539800.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

GATA

Protein Properties

Length: 545aa MW: 61228.3 Da PI: 6.3135

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023539800.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	34.8	2.3e-11	27	54	8	35
GATA 8 kTplWRrgpdgnktLCnaCGlyyrkkgl 35 TplWR+gp ++ LCnaCG ++r kg+ XP_023539800.1 27 GTPLWRNGPPDKPVLCNACGSRWRTKGS 54 5******55555*********997 PP

Sequence ? help Back to Top
Protein Sequence Length: 545 aa Download sequence
MFELISELHQ RKQCFSEAHI VSSCNAGTPL WRNGPPDKPV LCNACGSRWR TKGSLANYTP 60 LHARADPDEY DDKRLSRLKN SSVYKNKEVK LLKRKHYQDH GVVVGVIPDH AQSFHKAVDE 120 DTSNRSSSGS AISNSESCAQ FGGADGSDLT GPSQSTAWES MVPSRKRTCV DRPKSTAVEK 180 LTKDLYTILR EQQSYFSGSS EEDLLFESET PMVSVEIGHG SILMRHPSSI AREEESEASS 240 ISVDHKHFSV NEAYSESSIV PSTLGIGRKH SNGQAFLQEQ IKKDRPQSEK VQALGNHNSP 300 LCNIDLTIIL NFREFTKQLT SGDQRELMKY LPSVDTEELP DSLNSMFESP QFKENLNSFK 360 QLLTEGVFDF SFPGAKREDC KMLSRLVLWD LSKSKWVEQY DRLKVRSYLT GNHGDLVIDN 420 VFYGLQKCST SFVDDKRLLD GQNKKFSETR ITMTSPRRVT TKTSVESKEL VDDSFCFSPR 480 SLFALPSDGS SFTLESLHFD EDSFDQDLLL DVRSNSSFPQ AELLSFGGEQ ASNSSSSINL 540 RLMHR

Sequence ? help Back to Top

Protein Sequence Length: 545 aa Download sequence

MFELISELHQ RKQCFSEAHI VSSCNAGTPL WRNGPPDKPV LCNACGSRWR TKGSLANYTP  60
LHARADPDEY DDKRLSRLKN SSVYKNKEVK LLKRKHYQDH GVVVGVIPDH AQSFHKAVDE  120
DTSNRSSSGS AISNSESCAQ FGGADGSDLT GPSQSTAWES MVPSRKRTCV DRPKSTAVEK  180
LTKDLYTILR EQQSYFSGSS EEDLLFESET PMVSVEIGHG SILMRHPSSI AREEESEASS  240
ISVDHKHFSV NEAYSESSIV PSTLGIGRKH SNGQAFLQEQ IKKDRPQSEK VQALGNHNSP  300
LCNIDLTIIL NFREFTKQLT SGDQRELMKY LPSVDTEELP DSLNSMFESP QFKENLNSFK  360
QLLTEGVFDF SFPGAKREDC KMLSRLVLWD LSKSKWVEQY DRLKVRSYLT GNHGDLVIDN  420
VFYGLQKCST SFVDDKRLLD GQNKKFSETR ITMTSPRRVT TKTSVESKEL VDDSFCFSPR  480
SLFALPSDGS SFTLESLHFD EDSFDQDLLL DVRSNSSFPQ AELLSFGGEQ ASNSSSSINL  540
RLMHR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17570.2	1e-138	GATA family protein