PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT4G17570.2
Common NameGATA26
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GATA
Protein Properties Length: 526aa    MW: 58897.3 Da    PI: 7.4991
Description GATA transcription factor 26
Gene Model
Gene Model ID Type Source Coding Sequence
AT4G17570.2genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA33.17.8e-112753935
         GATA  9 TplWRrgpdgnktLCnaCGlyyrkkgl 35
                 TplWR+gp  ++ LCnaCG ++r kg+
  AT4G17570.2 27 TPLWRNGPPEKPVLCNACGSRWRTKGT 53
                 9*******88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.6E-41967IPR000679Zinc finger, GATA-type
CDDcd002028.35E-122463No hitNo description
SuperFamilySSF577165.23E-62657No hitNo description
Gene3DG3DSA:3.30.50.101.8E-72753IPR013088Zinc finger, NHR/GATA-type
PfamPF003201.4E-82753IPR000679Zinc finger, GATA-type
PfamPF139193.1E-10285385IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0000037anatomyshoot apex
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0008019anatomyleaf lamina base
PO:0009005anatomyroot
PO:0009006anatomyshoot system
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0020030anatomycotyledon
PO:0020100anatomyhypocotyl
PO:0020137anatomyleaf apex
PO:0025022anatomycollective leaf structure
PO:0025281anatomypollen
PO:0001054developmental stagevascular leaf senescent stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007064developmental stageLP.12 twelve leaves visible stage
PO:0007095developmental stageLP.08 eight leaves visible stage
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007103developmental stageLP.10 ten leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MIRTNGLGNK DMILGSEFVF MIRNCYTPLW RNGPPEKPVL CNACGSRWRT KGTLVNYTPL  60
HARADGDEND DHHRFQRMKS ISLGNKNKEI KMLKRKAIQE NIIIKRPVFE FSYGLKAAVI  120
EEDASNRSSS GSAVSNSESC AQFSSADGSE LTGPSQSNAW DTTVPCKRRT CVGRPKSSSV  180
EKLTKDLYNI LQEQQSSCLS VSSEEDLLFE NEMSMVSVEI GHGSVLMKNP HSFAREEESE  240
ASSLSSIENK SSISDAYSHS VKRVEIGAVR GSYYGGQTIK QEQFKRTKSQ TERVHVLGSH  300
GSPLCSIDLK DVFNFDEFIE QFTEEEQKKL MNLLPQIDSD DLPHSLRMMF ESAQFKDNFS  360
LFQQLIADGV FDVSSSSGAK LEEIRTFKKL ALTDFNKSRL VESYNLLKER EKGTGDSVTT  420
TSKSSIPNVP KNIVTIKRRY ENQIQVKSES RGLMRSPKRV MKMKASHETE NNVSCFRPRS  480
LASVFAQEGG SAVFSYEGNC SSDQDLLLLD LPSNGSFPQA ELLHQL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.273020.0flower| root
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible245428_at0.0
Expression AtlasAT4G17570-
AtGenExpressAT4G17570-
ATTED-IIAT4G17570-
Functional Description ? help Back to Top
Source Description
TAIREncodes a member of the GATA factor family of zinc finger transcription factors.
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT4G17570.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT4G17570
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0625620.0AY062562.1 Arabidopsis thaliana Unknown protein (Z97343.42) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001190755.10.0GATA transcription factor 26
SwissprotQ8W4H10.0GAT26_ARATH; GATA transcription factor 26
TrEMBLF4JP800.0F4JP80_ARATH; GATA transcription factor 26
STRINGAT4G17570.20.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16062785
Representative plantOGRP27491530
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Bancroft I
    Duplicate and diverge: the evolution of plant genome microstructure.
    Trends Genet., 2001. 17(2): p. 89-93
    [PMID:11173118]
  3. Reyes JC,Muro-Pastor MI,Florencio FJ
    The GATA family of transcription factors in Arabidopsis and rice.
    Plant Physiol., 2004. 134(4): p. 1718-32
    [PMID:15084732]
  4. Rana D, et al.
    Conservation of the microstructure of genome segments in Brassica napus and its diploid relatives.
    Plant J., 2004. 40(5): p. 725-33
    [PMID:15546355]
  5. Bi YM, et al.
    Genetic analysis of Arabidopsis GATA transcription factor gene family reveals a nitrate-inducible member important for chlorophyll synthesis and glucose sensitivity.
    Plant J., 2005. 44(4): p. 680-92
    [PMID:16262716]
  6. Liu PP,Koizuka N,Martin RC,Nonogaki H
    The BME3 (Blue Micropylar End 3) GATA zinc finger transcription factor is a positive regulator of Arabidopsis seed germination.
    Plant J., 2005. 44(6): p. 960-71
    [PMID:16359389]
  7. Town CD, et al.
    Comparative genomics of Brassica oleracea and Arabidopsis thaliana reveal gene loss, fragmentation, and dispersal after polyploidy.
    Plant Cell, 2006. 18(6): p. 1348-59
    [PMID:16632643]
  8. Manfield IW,Devlin PF,Jen CH,Westhead DR,Gilmartin PM
    Conservation, convergence, and divergence of light-responsive, circadian-regulated, and tissue-specific expression patterns during evolution of the Arabidopsis GATA gene family.
    Plant Physiol., 2007. 143(2): p. 941-58
    [PMID:17208962]
  9. Ascencio-Ib
    Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection.
    Plant Physiol., 2008. 148(1): p. 436-54
    [PMID:18650403]