PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023539593.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

FAR1

Protein Properties

Length: 680aa MW: 78051 Da PI: 7.4367

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023539593.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	66.2	9e-21	63	156	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 +fY+e+Ak++GFs+r+++++ + + t+r fvC + g++ ++ +++k +r+r+++r+gC+a ++++k+ +w++t + ++HnHel XP_023539593.1 63 EFYSEFAKRCGFSIRRHRTEGKdGIGKGLTRRYFVCHRAGNTPIKTPNENKPQRNRKSSRCGCQAYMRISKTMelgPPEWRITGFANHHNHELL 156 6************999887735667799*********9999999****************998677789***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 680 aa Download sequence
MMSEETGQLL VVYDDPSDQQ SLSLDETGST EESPDETRLS LDSSNDAIPY IGQRFPTHDS 60 AYEFYSEFAK RCGFSIRRHR TEGKDGIGKG LTRRYFVCHR AGNTPIKTPN ENKPQRNRKS 120 SRCGCQAYMR ISKTMELGPP EWRITGFANH HNHELLEPNQ VRFLPAYRTI SEIDKARIVM 180 YAKSGISVQQ MMRLMELEKG VEPGYLPFTE KDVRNLLQSF RKLDHEEESI DLLRMCRNIK 240 EKDPNFKFEY VIDSNNRLEN IAWSYASSIQ AYEIFGDAVV FDTTHRLTAF DLPLGIWVGI 300 NNYGMPCFLS CVLLREENLR SFAWALKVFI GFMNGKAPQT ILTDQNVCLK DAIAVELPTT 360 KHALCIWMIV AKFPSWFNAV LGDRYNEWKS EFCRLYNLES IEDFELGWRD MENSFGLHTN 420 RHIANLYCLR SLWALPFLRS HFFAGMTTIG QSKTINAFIQ RFLSAQTRLV QFIEQVAVGV 480 DFRDQAGEQQ TMQQNLQNIS LKTGAPMESH AATILTPFAF SKLQEQLVLA AHYATFQMDD 540 GFLVRHHTKV EGGRKVYWVP REGIISCSCH QFEFSGILCR HALRVLSTVN CFQIPDSYLP 600 VRWRRISMHS AKLLQNTTND HAEKIQLLQS LVSTLVTESA KSQERLDIAT EQVSLLLSRV 660 REHPTSLPGS RDVSSLHRNL

Sequence ? help Back to Top

Protein Sequence Length: 680 aa Download sequence

MMSEETGQLL VVYDDPSDQQ SLSLDETGST EESPDETRLS LDSSNDAIPY IGQRFPTHDS  60
AYEFYSEFAK RCGFSIRRHR TEGKDGIGKG LTRRYFVCHR AGNTPIKTPN ENKPQRNRKS  120
SRCGCQAYMR ISKTMELGPP EWRITGFANH HNHELLEPNQ VRFLPAYRTI SEIDKARIVM  180
YAKSGISVQQ MMRLMELEKG VEPGYLPFTE KDVRNLLQSF RKLDHEEESI DLLRMCRNIK  240
EKDPNFKFEY VIDSNNRLEN IAWSYASSIQ AYEIFGDAVV FDTTHRLTAF DLPLGIWVGI  300
NNYGMPCFLS CVLLREENLR SFAWALKVFI GFMNGKAPQT ILTDQNVCLK DAIAVELPTT  360
KHALCIWMIV AKFPSWFNAV LGDRYNEWKS EFCRLYNLES IEDFELGWRD MENSFGLHTN  420
RHIANLYCLR SLWALPFLRS HFFAGMTTIG QSKTINAFIQ RFLSAQTRLV QFIEQVAVGV  480
DFRDQAGEQQ TMQQNLQNIS LKTGAPMESH AATILTPFAF SKLQEQLVLA AHYATFQMDD  540
GFLVRHHTKV EGGRKVYWVP REGIISCSCH QFEFSGILCR HALRVLSTVN CFQIPDSYLP  600
VRWRRISMHS AKLLQNTTND HAEKIQLLQS LVSTLVTESA KSQERLDIAT EQVSLLLSRV  660
REHPTSLPGS RDVSSLHRNL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1 family protein