PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023539515.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

bHLH

Protein Properties

Length: 437aa MW: 47556.5 Da PI: 7.5537

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023539515.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.5	5e-13	274	319	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr+++P+ K++Ka+ L Av YI++L XP_023539515.1 274 NHVEAERQRRQKLNNRFYALRSVVPNV-----SKMDKASLLADAVIYINEL 319 799*********************6.....5*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 437 aa Download sequence
MDDSPNSMAS TLQQKLQFIL HNRHEWWAYS IFWLASKDHL TQNLVFNWRD GHFRGTRDFV 60 ARPSKPLSGN AQLISFGFDE AAVDRRERSD FVDLEWYYTV SVTRLFNMTD NVVGRVFDSG 120 TYVWLTADDG LDLYECERVK EARMRGIQTL VFVSISGGVL ELGSSELIKQ DWSLAQFAKS 180 VFGCGFANFA PFQEKNQEEG GGGGLIEAHA PPCSAVAKGE MGSSGGGGGG GGGGGGSSSD 240 SLSDNSDGNF ISNIDNKRGR RPSKSKTEST PPVNHVEAER QRRQKLNNRF YALRSVVPNV 300 SKMDKASLLA DAVIYINELK SKIQSLEAKL GGCGGGGNGG SSGGGGALEK NCVMNSKNNV 360 EVKIIGSEAM VRVQCRDENH PSARLLNVLR DLGLQIHHAS LSSVNDLMLQ DVVVRVPHGV 420 VLGEKALRIA ILQRLQC

Sequence ? help Back to Top

Protein Sequence Length: 437 aa Download sequence

MDDSPNSMAS TLQQKLQFIL HNRHEWWAYS IFWLASKDHL TQNLVFNWRD GHFRGTRDFV  60
ARPSKPLSGN AQLISFGFDE AAVDRRERSD FVDLEWYYTV SVTRLFNMTD NVVGRVFDSG  120
TYVWLTADDG LDLYECERVK EARMRGIQTL VFVSISGGVL ELGSSELIKQ DWSLAQFAKS  180
VFGCGFANFA PFQEKNQEEG GGGGLIEAHA PPCSAVAKGE MGSSGGGGGG GGGGGGSSSD  240
SLSDNSDGNF ISNIDNKRGR RPSKSKTEST PPVNHVEAER QRRQKLNNRF YALRSVVPNV  300
SKMDKASLLA DAVIYINELK SKIQSLEAKL GGCGGGGNGG SSGGGGALEK NCVMNSKNNV  360
EVKIIGSEAM VRVQCRDENH PSARLLNVLR DLGLQIHHAS LSSVNDLMLQ DVVVRVPHGV  420
VLGEKALRIA ILQRLQC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00870.1	2e-52	bHLH family protein