PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023538670.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

ARR-B

Protein Properties

Length: 580aa MW: 65997.2 Da PI: 6.7314

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023538670.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	45.3	2e-14	261	312	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 r++W+ e ++F +a+++LG +k Pk il+lm+ ++Ltl +v+ HLQkY+ XP_023538670.1 261 SRIVWNLERRRKFSDALNKLG--DKCRPKLILKLMNEPCLTLRQVANHLQKYKA 312 69****************5..889************************85 PP
2	Myb_DNA-binding	22.1	3.6e-07	265	311	4	48
S-HHHHHHHHHHHHHTTTT.-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg.tWktIartmg.kgRtlkqcksrwqkyl 48 W e ++ da ++lG + ++k+I + m+ +tl q+ +++qky+ XP_023538670.1 265 WNLERRRKFSDALNKLGDKcRPKLILKLMNePCLTLRQVANHLQKYK 311 55555679*******99********999**********7 PP
3	Response_reg	49.2	3e-17	21	126	1	107
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 +l+vd e l ++ l ++l+++ y +v+++ g al +++ek +Dl++ ++mp+md + +l + + + + +i+++++ + + a++al G XP_023538670.1 21 ILVVDHETLSLKHLSSLLRQQSY-NVTTTGLGCIALSMIQEKGdqFDLVMANVSMPDMDSFSFLHVLLKMN--IAVIFMSSTMNLKVATKALAEG 112 89*******************.***********999889******************8865..****************** PP ESEEEESS--HHHH CS Response_reg 94 akdflsKpfdpeel 107 a fl Kp+++++l XP_023538670.1 113 ACYFLQKPVSKDDL 126 *********998 PP

Sequence ? help Back to Top
Protein Sequence Length: 580 aa Download sequence
MQEMDHWVPD SLPSFTKKLH ILVVDHETLS LKHLSSLLRQ QSYNVTTTGL GCIALSMIQE 60 KGDQFDLVMA NVSMPDMDSF SFLHVLLKMN IAVIFMSSTM NLKVATKALA EGACYFLQKP 120 VSKDDLKYVW QHVYRSNINI AKLTHKANCV DKAKSGQEFV GFQNDNPVVL SRSTDTASYN 180 NNYSINYQLM SHNEKVQNMP TNSHDTLVAS YFEGERSADD IEGTNKEGVT YYSKPTNFEH 240 TKADEDNGRG KEYYISRNTR SRIVWNLERR RKFSDALNKL GDKCRPKLIL KLMNEPCLTL 300 RQVANHLQKY KAQVESIKKG RKNKLAPRME ASKFDCSVMT QLPPLVQRQQ NHEANKFIQQ 360 NHEANKSTQQ NHETNKSTQQ NHEANKTTQG GSTSLSGGKR FRLIAPKPAL NPRLLVSANF 420 VNHGLIMFDH NFQHVASNYN SVPYSINKTT PEVTSYRAFD EIQFPDIHQV DVAQQLEAME 480 FCGTSEGIQL MSKNIALPDS TNLDNIAANF GNEGSQQQFA ECDYILNVLE DNPYDLRNDF 540 SLSDVDKYSE WLRNTVLEDE SGLDKFINDD AEIFPVEINQ

Sequence ? help Back to Top

Protein Sequence Length: 580 aa Download sequence

MQEMDHWVPD SLPSFTKKLH ILVVDHETLS LKHLSSLLRQ QSYNVTTTGL GCIALSMIQE  60
KGDQFDLVMA NVSMPDMDSF SFLHVLLKMN IAVIFMSSTM NLKVATKALA EGACYFLQKP  120
VSKDDLKYVW QHVYRSNINI AKLTHKANCV DKAKSGQEFV GFQNDNPVVL SRSTDTASYN  180
NNYSINYQLM SHNEKVQNMP TNSHDTLVAS YFEGERSADD IEGTNKEGVT YYSKPTNFEH  240
TKADEDNGRG KEYYISRNTR SRIVWNLERR RKFSDALNKL GDKCRPKLIL KLMNEPCLTL  300
RQVANHLQKY KAQVESIKKG RKNKLAPRME ASKFDCSVMT QLPPLVQRQQ NHEANKFIQQ  360
NHEANKSTQQ NHETNKSTQQ NHEANKTTQG GSTSLSGGKR FRLIAPKPAL NPRLLVSANF  420
VNHGLIMFDH NFQHVASNYN SVPYSINKTT PEVTSYRAFD EIQFPDIHQV DVAQQLEAME  480
FCGTSEGIQL MSKNIALPDS TNLDNIAANF GNEGSQQQFA ECDYILNVLE DNPYDLRNDF  540
SLSDVDKYSE WLRNTVLEDE SGLDKFINDD AEIFPVEINQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	268	273	ERRRKF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68210.1	2e-36	ARR-B family protein