PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023538437.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family GATA
Protein Properties Length: 385aa    MW: 42000.7 Da    PI: 6.2634
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023538437.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.95.8e-18272306135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  XP_023538437.1 272 CMHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 306
                     99*****************************9885 PP
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    
MEAPEYFHKN AYCSQFTSDK DAAASTATAS ATADHFIVEE LLDFSNDDDS AIADSGGFFN  60
NVTCFLNGNS AESSAATAVE SSNSSSFSGS ERTSFFDDVS GSSLADVRFS DDIFIPYNEL  120
VELEWLASFE EEPFSSEDMQ KLELITGVKV KPDEPPQSQH PTTAPSAVSA ASHGRNAAAA  180
IFKPDIVAVP AKARSKRSRI IPSNWNNSRL LPLSPTSSSS ELDIPATEPP PHPVKKVPPK  240
VAATATATAA VKKKESSSSS ETGMSAGEGR KCMHCATDKT PQWRTGPMGP KTLCNACGVR  300
YKSGRLVPEY RPAASPTFVL TKHSNSHRKV LELRRQKELQ KAQEQQALMM DHHHHHHHQE  360
MMFDSSNGED YLMKQNVAHD YLHLI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.18e-45GATA family protein