PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023537871.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 302aa MW: 33746.9 Da PI: 8.2304

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023537871.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.8	6.1e-19	109	154	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd +l+++v ++G+++W++I+r++ gR++k+c++rw + XP_023537871.1 109 KGPWSAEEDRILIQLVDRYGPRNWSLISRYIK-GRSGKSCRLRWCNQ 154 79***************************9.*********985 PP
2	Myb_DNA-binding	51.7	2e-16	163	205	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++ Ede ++ a+ ++G++ W+tIar ++ gRt++ +k++w++ XP_023537871.1 163 PFSATEDETILAAHSRFGNR-WATIARLLP-GRTDNAVKNHWNST 205 79****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence
MGSVKQLCVY CHVLNAAHSY VFPTYFTESS FLEAPSLVFT SKPLDYASQP DSCTFSLLPY 60 KSPKQPPPPS LTPLFSLQTM TTSSSSSSSS TSSDSSFSGN PSGRPEKIKG PWSAEEDRIL 120 IQLVDRYGPR NWSLISRYIK GRSGKSCRLR WCNQLSPTVE HRPFSATEDE TILAAHSRFG 180 NRWATIARLL PGRTDNAVKN HWNSTLKRRA RHQQHHLVID GITPDNHANA VTDSDFKLSV 240 PLQDDPLTAL TLAPPGISGG VVAEERRIES FPAGFWDAMR DVVAREVREY MTTTFLENQE 300 FH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	6e-58	MYB family protein