PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023536933.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | C3H | ||||||||
Protein Properties | Length: 395aa MW: 43486.6 Da PI: 7.3945 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.2 | 5e-07 | 148 | 168 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C +f++ G C+ Gd C FaHg XP_023536933.1 148 ACADFRK-GNCNKGDACEFAHG 168 799****.*************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 395 aa Download sequence |
MMIDEQPNRP NQKLHVPPWT FMEDPASDGY SHSPGSGGSG SGSGSGVKCD GCSTGDGYSP 60 FYLQEALAML QQYLPSKEAE VESDLDASGR EADSPVDTYS SDQFRMYEFK IKKCLRGRSH 120 DWTECPFAHP GEKARRRDPR KYYYSGTACA DFRKGNCNKG DACEFAHGVF ECWLHPARYR 180 TQPCKDGTSC RRRVCFFAHT PEQLRILPQQ SPRSTSSIPS YDGSPLRQAI EACAKQMPYL 240 SSSGTSTPVS PRIESPPQSP MFRSLNRPHA TSSINEMVAS LRSLQLHKEL GKVQSPSSLW 300 NVQVGSPVFG SPGESSARSG FSSLPDTPTP PAVRYLDFWD LGSGEEQAMA RVESGRDLRA 360 KMLEKLRKEN SVACGDQEKP GGGSVDVGWI SELLK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29190.1 | 1e-111 | C3H family protein |