PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023536672.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

ARF

Protein Properties

Length: 550aa MW: 60355.1 Da PI: 7.0464

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023536672.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	70.4	2.3e-22	106	207	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+lt+sd+++ g +++p+ +a++ ++ + tl+++d +g +W++++iyr++++r++lt+GW++Fv+ ++L +gD+vvF ++ XP_023536672.1 106 FAKILTSSDANNGGGFSVPRCCADSVfpplnyqADPPVQ--TLSITDVHGVVWNFRHIYRGTPRRHLLTTGWSKFVNHKKLIAGDSVVFA--KNL 196 89*******************999995444444..9********************************************..678 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++ ++v+++r+ XP_023536672.1 197 RGDMFVGIRRA 207 8889**997 PP
2	Auxin_resp	82.2	1.1e-27	263	345	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a++ ++Fe vY+Pra++seFvv+vekv+k+ + ++ G+R+kma+ete s+ + ++Gtv++ s + W +S+Wr+L+ XP_023536672.1 263 AAELAAQFKPFELVYYPRAGRSEFVVQVEKVNKSKNYQWYSGTRVKMAMETEYSKMTWYQGTVTSASVPEHGPWMGSPWRMLE 345 67889999********************************************99999********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 550 aa Download sequence
MDRQLWQAFA GKSVHIHTVG SEVYYFVQGH VEQATYIPSL SQSVLSNPAT KCLVTGTDFH 60 ADSLSDEVCI KLNLHPIRPG RDESVVVSRF GRCDDNGGER DKIESFAKIL TSSDANNGGG 120 FSVPRCCADS VFPPLNYQAD PPVQTLSITD VHGVVWNFRH IYRGTPRRHL LTTGWSKFVN 180 HKKLIAGDSV VFAKNLRGDM FVGIRRASTS ITRAISGGDC GRWNSQNGGA RCSLEENCSG 240 DGGTKVFSRR NIGKLPAEAV ANAAELAAQF KPFELVYYPR AGRSEFVVQV EKVNKSKNYQ 300 WYSGTRVKMA METEYSKMTW YQGTVTSASV PEHGPWMGSP WRMLEVTWDE IDALQSAKYV 360 SPWEVELATP TPPIQPPLHP AKKFRGLPKS GMLNGEAELF SPLMNFVDST MEQFNPSLLN 420 LNSFPAGMQG ARQKLFCESR LFNPCKEMTP LTCDESSMSE LNAAKTMQMV STDLLIGSVQ 480 FDTLSSDSQA SVLSFATGTA ENQNCCNSAK AGVNSIQLFG QVIYMNPPVE NGLENGVSTN 540 DGGKNLNQSA

Sequence ? help Back to Top

Protein Sequence Length: 550 aa Download sequence

MDRQLWQAFA GKSVHIHTVG SEVYYFVQGH VEQATYIPSL SQSVLSNPAT KCLVTGTDFH  60
ADSLSDEVCI KLNLHPIRPG RDESVVVSRF GRCDDNGGER DKIESFAKIL TSSDANNGGG  120
FSVPRCCADS VFPPLNYQAD PPVQTLSITD VHGVVWNFRH IYRGTPRRHL LTTGWSKFVN  180
HKKLIAGDSV VFAKNLRGDM FVGIRRASTS ITRAISGGDC GRWNSQNGGA RCSLEENCSG  240
DGGTKVFSRR NIGKLPAEAV ANAAELAAQF KPFELVYYPR AGRSEFVVQV EKVNKSKNYQ  300
WYSGTRVKMA METEYSKMTW YQGTVTSASV PEHGPWMGSP WRMLEVTWDE IDALQSAKYV  360
SPWEVELATP TPPIQPPLHP AKKFRGLPKS GMLNGEAELF SPLMNFVDST MEQFNPSLLN  420
LNSFPAGMQG ARQKLFCESR LFNPCKEMTP LTCDESSMSE LNAAKTMQMV STDLLIGSVQ  480
FDTLSSDSQA SVLSFATGTA ENQNCCNSAK AGVNSIQLFG QVIYMNPPVE NGLENGVSTN  540
DGGKNLNQSA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77850.1	1e-136	ARF family protein