PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023535867.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C2H2

Protein Properties

Length: 479aa MW: 51316.8 Da PI: 8.528

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023535867.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.3	1.3e-05	63	85	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_023535867.1 63 FVCEICNKGFQRDQNLQLHRRGH 85 89*******************88 PP
2	zf-C2H2	15.4	5.5e-05	139	161	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+k + ks+ k H++t+ XP_023535867.1 139 WKCERCSKKYAVKSDWKAHMKTC 161 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 479 aa Download sequence
MVDMENCSPV AVSGDASLSS SRYIEPVTAV ALPKKKRNLP GMPDPTAEVI ALSAESLLAT 60 NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LRQRTDNEVR KRVYVCPEPT CVHHNSARAL 120 GDLTGIKKHF CRKHGEKKWK CERCSKKYAV KSDWKAHMKT CGTREYKCDC GTLFSRRDSF 180 ITHRAFCDVL AEESARAQTL AVPYSKAKES DTVSPPQPPL TPTTTVVSPA LSIHSSELAD 240 TQIRVSSIST PSAAAVNSSS NDLFGNSTVF APSASSPTVA VSNLPTSIVS YDCPSTRPSV 300 STVNPTSLSL STPLYLSTKG SSSLFPRPDQ DRLQYTCSTQ PAAMSATALL QKAAEMGATA 360 SNPSLFRGIG MATTTSSVHD RSATANVNRD HRNGASLTAG LWLELPSGPA GSGLMMAGGP 420 FCSFGSQPMT RDLLGLGIDG GGASTSRFSA LIASMNGGCA YDESSTADAW DRDEQDGKY

Sequence ? help Back to Top

Protein Sequence Length: 479 aa Download sequence

MVDMENCSPV AVSGDASLSS SRYIEPVTAV ALPKKKRNLP GMPDPTAEVI ALSAESLLAT  60
NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LRQRTDNEVR KRVYVCPEPT CVHHNSARAL  120
GDLTGIKKHF CRKHGEKKWK CERCSKKYAV KSDWKAHMKT CGTREYKCDC GTLFSRRDSF  180
ITHRAFCDVL AEESARAQTL AVPYSKAKES DTVSPPQPPL TPTTTVVSPA LSIHSSELAD  240
TQIRVSSIST PSAAAVNSSS NDLFGNSTVF APSASSPTVA VSNLPTSIVS YDCPSTRPSV  300
STVNPTSLSL STPLYLSTKG SSSLFPRPDQ DRLQYTCSTQ PAAMSATALL QKAAEMGATA  360
SNPSLFRGIG MATTTSSVHD RSATANVNRD HRNGASLTAG LWLELPSGPA GSGLMMAGGP  420
FCSFGSQPMT RDLLGLGIDG GGASTSRFSA LIASMNGGCA YDESSTADAW DRDEQDGKY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	1e-113	C2H2 family protein