PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023535858.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family ERF
Protein Properties Length: 387aa    MW: 43167 Da    PI: 4.7869
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023535858.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.28.6e-1880130155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     ++y+GVr++  +g+WvAeIr+p     r  r +lg+f  a eAa a+++a++ ++g
  XP_023535858.1  80 CKYRGVRQRT-WGKWVAEIREPD----RgSRLWLGTFSNAIEAALAYDEAARTMYG 130
                     79*****999.**********82....34***********************9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    
MSLGNRYSDA ISLPTKRIRK RKSRSRRDPS TVAETLAKWK AYNECVNSCD DGSKPIRKAP  60
AKGSKKGCMK GKGGPMNSNC KYRGVRQRTW GKWVAEIREP DRGSRLWLGT FSNAIEAALA  120
YDEAARTMYG QTARLNLPNI TNTRLLAGSA SDSSTTTSTT TTSSNQSDVC VSEELTLTPQ  180
PVPPDVKIEG EPRTGFPVDH VATSAIDAKF CDQGNDQAAL LGIEFPSLDH FPNFQMDEMF  240
ELRTNDIAMP VSLEKKVKHE SVDGEYPDRN SDPFDIQDVL QDFQIDEMFD VEELLSIINS  300
DSMHDQSFLQ GNVYDSNNMV PPQPSSLSNQ FRYPDEKLLG SLQHMEQAPA DVNHGFDFLK  360
EGREEDLNAT TDDFARYLNY EMGGLGF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12128RKSRSRRD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.13e-39ERF family protein