PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023535296.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family GATA
Protein Properties Length: 331aa    MW: 37078.4 Da    PI: 6.0913
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023535296.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.71.4e-17225259135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  XP_023535296.1 225 CLHCATDKTPQWRTGPFGPKTLCNACGVRYKSGRL 259
                     99*****************************9885 PP
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    
MEAPHYFHPA FSTQNPHSSD TLETTATAAA ADHFLVEDLL DFSNDDHVVF TDATSDNQTP  60
TSTDSSTLTL LEQPNNGHHN YSXHHNYSYL DANFSTDLPV PYDDLAELEW LSNFVEDSFS  120
TDDLEKLSLI SGVNSRTDDD AAAKPREFQT GHSAGFHPDM SVPAKAARSK RSRACIWNSR  180
VSVLSPTNSS SETDVVVTLT AKKPSKKKET PDDTLSPSNG EGRKCLHCAT DKTPQWRTGP  240
FGPKTLCNAC GVRYKSGRLV PEYRPAASPT FVLTKHSNSH RKVMELRRQK EMMRAQQQQQ  300
QHHQETMEFN HASNNDNDDY LIHQHIAPIY E
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.15e-70GATA family protein