PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023534378.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

Trihelix

Protein Properties

Length: 751aa MW: 82320.5 Da PI: 5.2138

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023534378.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	99.9	2.1e-31	103	187	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r++m++++r++ lk+plW+evs+k+ e g++rs+k+Ckek+en++k+yk++keg+++r ++ +t+++f+qlea XP_023534378.1 103 RWPRQETLALLRIRSDMDSAFRDATLKGPLWDEVSRKLTELGYNRSAKKCKEKFENVQKYYKRTKEGRGGR--QDGKTYKFFTQLEA 187 8******************************************************************98..56667*****85 PP
2	trihelix	103.6	1.5e-32	506	591	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k evlaLi++r +e+r++++ k+ lWee+s+ m++ g++rs+k+Ckekwen+nk++kk+ke++kkr e+s+tcpyf++l+a XP_023534378.1 506 RWPKPEVLALIKLRGGLETRYQETGPKGLLWEEISAGMQRMGYKRSAKRCKEKWENINKYFKKVKESNKKR-REDSKTCPYFNELDA 591 8*******************************************************************8.78999*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 751 aa Download sequence
MEPAAEPGSG SGSGLELPPS QSQFTVSPPD ITTPSLTVDA ITDSQQVEVA SPISSRPPAS 60 SSLNYEEIFR LSTTVQMPVV GDDEALAGDD ADRTTGSSGA GNRWPRQETL ALLRIRSDMD 120 SAFRDATLKG PLWDEVSRKL TELGYNRSAK KCKEKFENVQ KYYKRTKEGR GGRQDGKTYK 180 FFTQLEALHN ASASASASAS ASAVASTPNV AVSCFSAPPI GFGISNPTPI SSVKISSTAI 240 SSQTPMGIYS PADHFTVRPP PVTAPMGVSF SSNTSSASTE EDDNDEDEMG FDVDLEGEPS 300 SVAGTSRKRR RGVVKGSGSR THKMMMEFFE GLMKEVMHKQ EVMQQKFLEA MGKREQDRMI 360 REETWKRQEM ARLSREQERM AQERTISASR DAAIIAFLQK FTGQTIQLPV VNIPSSVAPH 420 HQHQQHDVPV PTPTPVPVPV SVPVPLSPVP PPPLQPQTAL SLQQNKKTAQ DQNPPPSNTL 480 SPLDQPMPYQ EISHGGDGSA EPFSSRWPKP EVLALIKLRG GLETRYQETG PKGLLWEEIS 540 AGMQRMGYKR SAKRCKEKWE NINKYFKKVK ESNKKRREDS KTCPYFNELD ALYRKKILGS 600 SSGGGGGSDG GGSGSRSSFS DTSKTEQDPI KNMDTEMAPS TATETSQTIL TEGLSASLFG 660 EGTEEQPATS TKPEDIVNEL MELHELYRPD SNNEEEYCSE DEDDTPDNED KDKNKNTKNT 720 KNMDYKIEFE RRNAGSSNGV GNEFQSMAVV Q

Sequence ? help Back to Top

Protein Sequence Length: 751 aa Download sequence

MEPAAEPGSG SGSGLELPPS QSQFTVSPPD ITTPSLTVDA ITDSQQVEVA SPISSRPPAS  60
SSLNYEEIFR LSTTVQMPVV GDDEALAGDD ADRTTGSSGA GNRWPRQETL ALLRIRSDMD  120
SAFRDATLKG PLWDEVSRKL TELGYNRSAK KCKEKFENVQ KYYKRTKEGR GGRQDGKTYK  180
FFTQLEALHN ASASASASAS ASAVASTPNV AVSCFSAPPI GFGISNPTPI SSVKISSTAI  240
SSQTPMGIYS PADHFTVRPP PVTAPMGVSF SSNTSSASTE EDDNDEDEMG FDVDLEGEPS  300
SVAGTSRKRR RGVVKGSGSR THKMMMEFFE GLMKEVMHKQ EVMQQKFLEA MGKREQDRMI  360
REETWKRQEM ARLSREQERM AQERTISASR DAAIIAFLQK FTGQTIQLPV VNIPSSVAPH  420
HQHQQHDVPV PTPTPVPVPV SVPVPLSPVP PPPLQPQTAL SLQQNKKTAQ DQNPPPSNTL  480
SPLDQPMPYQ EISHGGDGSA EPFSSRWPKP EVLALIKLRG GLETRYQETG PKGLLWEEIS  540
AGMQRMGYKR SAKRCKEKWE NINKYFKKVK ESNKKRREDS KTCPYFNELD ALYRKKILGS  600
SSGGGGGSDG GGSGSRSSFS DTSKTEQDPI KNMDTEMAPS TATETSQTIL TEGLSASLFG  660
EGTEEQPATS TKPEDIVNEL MELHELYRPD SNNEEEYCSE DEDDTPDNED KDKNKNTKNT  720
KNMDYKIEFE RRNAGSSNGV GNEFQSMAVV Q

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	307	311	RKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	4e-60	Trihelix family protein