PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023533953.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family GATA
Protein Properties Length: 262aa    MW: 28403.4 Da    PI: 8.6665
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023533953.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.52.5e-20124158135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C+nC tt+TplWR+gp+g+k+LCnaCG++++k+++
  XP_023533953.1 124 CANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 158
                     ********************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    
MMHHCGGAGG AASSFSVFLS VPNHGGAAHD MMDIYSNNYA SSSSSSSPSS VDCTLSLGTP  60
STRSSEFDSD KRAAPRHHRR SAGSYVSNFC WDLLHPKHKS AGRSTASNAA AVPSSGDPLL  120
ARRCANCDTT STPLWRNGPR GPKSLCNACG IRFKKEERRA AATVNCTATT MAAESNNHHH  180
LHQHHQMFNG NYTNSTATWV PHHSPVATQK LPCLSAAAIN NESMFIGNDD VRRTEQENGI  240
SYLSWRLNVT DHRPSLVHDF TR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50870.14e-49GATA family protein