PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023533791.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

LBD

Protein Properties

Length: 223aa MW: 25064.3 Da PI: 8.4131

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023533791.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	111.6	5.4e-35	14	105	1	92
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 aCaaCk++r+kC + C+lapyfpa+q+++f++vhk+FG+snv+k++k+++ee+r++a++slv+eA +r++dPv G +g ++++ ++l+ k XP_023533791.1 14 ACAACKHQRKKCHETCPLAPYFPADQNREFQAVHKVFGVSNVTKMVKNVREEDRRKAVESLVWEAVCRQNDPVLGPFGEYKRVLEELKVCKM 105 7******************************************************************************9999998887665 PP

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence
MQRHNLGALQ PAPACAACKH QRKKCHETCP LAPYFPADQN REFQAVHKVF GVSNVTKMVK 60 NVREEDRRKA VESLVWEAVC RQNDPVLGPF GEYKRVLEEL KVCKMGQNQS QSSNPFVGQV 120 GLPCFGGSIS NNGNGIMGLI NGGVNGTHLF NYLHDNLSAI IDSSPYTNSS TYNLQSPEKL 180 MRLQQDHKEI SSTIVVPFQP PPPQQQQQHQ QQHQQHPNFH HCF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06280.1	7e-43	LBD family protein