PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023533097.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

LBD

Protein Properties

Length: 289aa MW: 32462.4 Da PI: 6.9937

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023533097.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	139.1	1.5e-43	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk+FGasnv+kll++l+ ++reda++sl+yeAe r+rdPvyG+vg+i+ lq++l+q++++l XP_023533097.1 7 PCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELNATQREDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQTDLY 101 7********************************************************************************************99 PP DUF260 96 llkee 100 +k+e XP_023533097.1 102 NAKKE 106 98876 PP

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence
MSSSNSPCAA CKFLRRKCTQ ECVFAPYFPP DQPQKFANVH KVFGASNVTK LLNELNATQR 60 EDAVNSLAYE AEFRLRDPVY GCVGLISVLQ HKLKQMQTDL YNAKKELSTY IGSQAMLPIL 120 QPPIAGNHHM FPMLGIPNSA AAPSSSHQML IRDTPQQTQT QTQNQNQSQN QLFEAQQLAA 180 AVAAREQQEM FRAYEQKQNQ TQTQHHSQRQ QELMRFDGFD PAGNQINSSG SNLTLGTFVD 240 NSYQIEAQPL QVQLFLQPQQ TLVEQHPQTQ HKPEPTAEDG RNMNMGPSC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	2e-73	LBD family protein