PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023531587.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

HD-ZIP

Protein Properties

Length: 205aa MW: 23284.7 Da PI: 10.0744

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023531587.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.7	9.4e-19	73	127	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq + Lee F+ + +++ ++++ LA++l+L++rqV vWFqNrRa+ k XP_023531587.1 73 RKKLRLSKEQATLLEESFKLHTTLNPAQKQALAHQLNLKTRQVEVWFQNRRARTK 127 788899***********************************************98 PP
2	HD-ZIP_I/II	117.9	5.7e-38	73	161	1	89
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rlskeq++lLEesF+ +++L+p +K++la++L+l++rqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l+een+rL+ke +eLr+ XP_023531587.1 73 RKKLRLSKEQATLLEESFKLHTTLNPAQKQALAHQLNLKTRQVEVWFQNRRARTKLKQTEVDCEFLKKCCERLNEENRRLKKELHELRS 161 69*************************************************************************************93 PP

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence
MGDQDDLCNI RLGLSLGSGF GEYVPKKMQK INSNHNNPKS FTDLSFTLVP KQELPINSST 60 TTNSLGSERE RERKKLRLSK EQATLLEESF KLHTTLNPAQ KQALAHQLNL KTRQVEVWFQ 120 NRRARTKLKQ TEVDCEFLKK CCERLNEENR RLKKELHELR SIKLGASQLY IQLPKAATLT 180 ICPSCDKITR TPAANAAAEP NSPPL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	71	77	RERKKLR
2	122	130	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	9e-50	HD-ZIP family protein